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Report for CCDS14823.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14823.1 Public Mus musculus 1 Lactb2 23 108 98 CCDS HistoryNCBI Gene:212442Re-query CCDS DB by CCDS ID:14823.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14823.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027071.6 ENSMUSP00000027071.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027071.6Link to Ensembl Protein Viewer:ENSMUSP00000027071.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027071Re-query CCDS DB by Protein ID:ENSMUSP00000027071
Original member NCBI NM_145381.2 NP_663356.1 Updated not alive Link to Nucleotide Sequence:NM_145381.2Link to Protein Sequence:NP_663356.1Re-query CCDS DB by Nucleotide ID:NM_145381Re-query CCDS DB by Protein ID:NP_663356
Current member NCBI NM_145381.3 NP_663356.1 Accepted alive Link to Nucleotide Sequence:NM_145381.3Link to Protein Sequence:NP_663356.1Re-query CCDS DB by Nucleotide ID:NM_145381Re-query CCDS DB by Protein ID:NP_663356Link to BLAST:NP_663356.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663356.1 288 Q99KR3 288 100% 0 0

Chromosomal Locations for CCDS 14823.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 13626861 13626904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 13627356 13627437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 13630065 13630213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 13638231 13638409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 13647385 13647511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 13650721 13650884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 13660329 13660450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGGCTGCCGCTCTGCAGCGCATCGAGCAGCTGTCCAGTCGGGTGGTGCGCGTGTTGGGCTGCAACCCGG
GTCCCATGACCCTGCAAGGCACCAACACGTACCTGGTGGGGACCGGCAGCAGGAGAATCCTCATTGACAC
TGGTGAGCCATCAGTTCCAGAATATATCAGCTGTTTAAAGCAAGCCTTGGTTGAGTTTGACACAGCAATC
CAGGAAATCCTGGTGACACACTGGCATTCTGATCATTCTGGAGGCATTGTAGACATTTGTAAAAACATCA
ATAATGACACCACCTACTGCATTAAAAAACTTCGACGGAATCCCCAGAGAGAAGAAATTATAGGAAATGG
AGAACAGCAATTTATTTATATAGAAAACGGAGACGTGGTTAAGACCGAGGGAGCCACTCTCAGAGTTTTG
TACACTCCTGGCCACACTGATGATCACATGGCTTTACTCCTGGAGGAGGAGAATGCCATCTTTTCTGGGG
ACTGCATCCTAGGAGAAGGGACGACAATATTTGAAGACCTCTATGATTATATGAACTCCCTAAACAACTT
ACTAAAAATCAAAGCTAACATTATATATCCAGGACATGGCCCAGTCATCCATAATGCTGAAGCTAAAATT
CTGGAATATATTTCTCATAGAAATAACCGAGAAGAACAGATTATTTCATTATTCCGTGATAACTTTGAGA
AATCATTTACCGTAACGGAACTTAGGACAATGATTTACAAGGATGTTCCAGAGAATTTACATAAGATGGC
AGAGCATAATCTCTTGCTTCATTTGAGAAAACTAGAGAAAGATGGGAAGATATTCTACACAACAACTCCT
GTCAAGAAATGGAAAGCCGTCCTTTAG

Translation (288 aa):
MAAALQRIEQLSSRVVRVLGCNPGPMTLQGTNTYLVGTGSRRILIDTGEPSVPEYISCLKQALVEFDTAI
QEILVTHWHSDHSGGIVDICKNINNDTTYCIKKLRRNPQREEIIGNGEQQFIYIENGDVVKTEGATLRVL
YTPGHTDDHMALLLEEENAIFSGDCILGEGTTIFEDLYDYMNSLNNLLKIKANIIYPGHGPVIHNAEAKI
LEYISHRNNREEQIISLFRDNFEKSFTVTELRTMIYKDVPENLHKMAEHNLLLHLRKLEKDGKIFYTTTP
VKKWKAVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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