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Report for CCDS20262.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20262.1 Public Mus musculus 6 Tacr1 23 108 98 CCDS HistoryNCBI Gene:21336Re-query CCDS DB by CCDS ID:20262.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20262.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032122.10 ENSMUSP00000032122.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032122.10Link to Ensembl Protein Viewer:ENSMUSP00000032122.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032122Re-query CCDS DB by Protein ID:ENSMUSP00000032122
Original member Current member EBI ENSMUST00000203775.1 ENSMUSP00000145217.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203775.1Link to Ensembl Protein Viewer:ENSMUSP00000145217.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203775Re-query CCDS DB by Protein ID:ENSMUSP00000145217
Original member Current member NCBI NM_009313.5 NP_033339.2 Accepted alive Link to Nucleotide Sequence:NM_009313.5Link to Protein Sequence:NP_033339.2Re-query CCDS DB by Nucleotide ID:NM_009313Re-query CCDS DB by Protein ID:NP_033339Link to BLAST:NP_033339.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033339.2 407 P30548 407 100% 0 0

Chromosomal Locations for CCDS 20262.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 82403610 82403998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82492526 82492720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82552887 82553037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82554860 82555056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 82556927 82557218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1224 nt):
ATGGATAACGTCCTTCCTGTGGACTCTGATCTCTTCCCCAACACCTCCACCAACACTTCTGAGTCTAACC
AGTTTGTGCAACCTACCTGGCAAATTGTCCTTTGGGCAGCCGCCTATACGGTCATCGTGGTGACTTCCGT
GGTGGGCAACGTAGTGGTGATATGGATCATTTTGGCCCACAAGAGAATGAGGACAGTGACCAATTATTTC
CTGGTGAACCTGGCCTTCGCTGAGGCCTGCATGGCTGCATTCAATACAGTGGTGAACTTCACCTACGCAG
TCCACAACGTGTGGTACTACGGCCTCTTTTACTGCAAGTTTCACAACTTCTTCCCCATTGCTGCTCTCTT
CGCCAGTATCTACTCCATGACAGCTGTGGCCTTTGACAGATACATGGCCATCATCCACCCTCTTCAGCCC
CGGCTGTCGGCCACTGCTACCAAAGTGGTCATCTTTGTCATCTGGGTCCTGGCTCTCCTGCTGGCCTTCC
CACAGGGCTACTACTCCACCACAGAGACCATGCCCAGCAGAGTAGTGTGCATGATTGAGTGGCCAGAACA
TCCCAACAGGACTTACGAGAAAGCGTACCACATCTGTGTGACTGTGCTGATCTACTTCCTGCCTCTGCTG
GTGATTGGCTATGCATACACTGTGGTAGGGATTACACTGTGGGCCAGTGAGATCCCCGGTGACTCCTCTG
ACCGTTACCATGAGCAAGTCTCTGCCAAGCGCAAGGTGGTCAAAATGATGATCGTGGTTGTGTGTACCTT
CGCCATCTGCTGGCTGCCCTTCCACATCTTCTTCCTCCTGCCCTACATCAACCCAGATCTCTACCTTAAG
AAGTTCATCCAGCAGGTCTACCTGGCCAGCATGTGGCTGGCCATGAGTTCTACCATGTACAACCCCATCA
TCTACTGCTGCCTCAATGACAGGTTCCGTCTGGGCTTCAAGCATGCCTTTCGCTGCTGCCCTTTCATCAG
TGCTGGTGATTATGAGGGGCTGGAAATGAAATCCACCCGATACCTCCAGACCCAGAGCAGCGTGTACAAG
GTCAGCCGCCTGGAGACCACCATCTCCACTGTGGTGGGAGCCCATGAAGATGAGCCAGAGGAAGGTCCCA
AGGCCACACCTTCATCCTTGGATCTCACCTCCAATGGCTCCTCTCGAAGCAACTCGAAGACCATGACAGA
AAGCTCCAGCTTCTACTCTAACATGCTGGCCTAA

Translation (407 aa):
MDNVLPVDSDLFPNTSTNTSESNQFVQPTWQIVLWAAAYTVIVVTSVVGNVVVIWIILAHKRMRTVTNYF
LVNLAFAEACMAAFNTVVNFTYAVHNVWYYGLFYCKFHNFFPIAALFASIYSMTAVAFDRYMAIIHPLQP
RLSATATKVVIFVIWVLALLLAFPQGYYSTTETMPSRVVCMIEWPEHPNRTYEKAYHICVTVLIYFLPLL
VIGYAYTVVGITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLK
KFIQQVYLASMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPFISAGDYEGLEMKSTRYLQTQSSVYK
VSRLETTISTVVGAHEDEPEEGPKATPSSLDLTSNGSSRSNSKTMTESSSFYSNMLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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