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Report for CCDS27255.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27255.1 Public Mus musculus 14 Lgi3 23 108 98 CCDS HistoryNCBI Gene:213469Re-query CCDS DB by CCDS ID:27255.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27255.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047331.7 ENSMUSP00000046705.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047331.7Link to Ensembl Protein Viewer:ENSMUSP00000046705.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000047331Re-query CCDS DB by Protein ID:ENSMUSP00000046705
Original member NCBI NM_145219.4 NP_660254.1 Updated not alive Link to Nucleotide Sequence:NM_145219.4Link to Protein Sequence:NP_660254.1Re-query CCDS DB by Nucleotide ID:NM_145219Re-query CCDS DB by Protein ID:NP_660254
Current member NCBI NM_145219.5 NP_660254.1 Accepted alive Link to Nucleotide Sequence:NM_145219.5Link to Protein Sequence:NP_660254.1Re-query CCDS DB by Nucleotide ID:NM_145219Re-query CCDS DB by Protein ID:NP_660254Link to BLAST:NP_660254.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660254.1 548 Q8K406 548 100% 0 0

Chromosomal Locations for CCDS 27255.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 70531065 70531270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70532068 70532139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70532775 70532846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70533177 70533248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70533345 70533416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70534369 70534538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70534681 70534845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70536217 70537034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1647 nt):
ATGGCCGGGCTACGAGCCAGGCGGGGCCCTGGGCGCAGGCTACTGGTGTTGTCCACGCTGGGTTTTTGCC
TAATGCTGCAAGTCAGTGCCAAGAGACCTCCTAAGACGCCCCCCTGCCCACCCAGCTGCTCCTGCACCAG
GGACACCGCCTTCTGCGTGGACTCTAAGTCGGTGCCCAAGAACCTGCCTTCAGAGGTCATCTCCCTGACG
CTGGTGAATGCTGCCTTCTCAGAGATCCAGGATGGAGCCTTCTCCCATCTGCCGTTGTTGCAGTTCTTGT
TACTCAACTCTAACAAGTTCACACTGATTGGAGACAATGCCTTCATAGGACTGTCGCACCTGCAGTACCT
CTTCATAGAGAACAATGACATCTGGGCTCTCTCCAAGTTTACCTTCAGAGGACTGAAGTCCTTGACACAC
CTTTCTCTGGCCAACAATAACCTGCAGACACTGCCCAGAGACATCTTCCGTCCCCTGGACATCCTGAGTG
ACTTAGACCTCCGGGGCAACGCACTTAACTGTGACTGCAAGGTAAAGTGGCTGGTGGAGTGGCTGGCACA
CACCAACACCACGGTGGCTCCCATCTACTGCGCCAGCCCGCCCCGCTTCCAGGAACACAAGGTGCAGGAC
TTGCCTCTTCGAGAATTCGACTGCATCACCACTGATTTTGTCCTCTACCAGACCCTGTCCTTCCCAGCAG
TGTCTGCGGAACCTTTCCTTTACTCTAGTGACCTCTACTTGGCTCTGGCCCAGCCAGGTGCCAGCGCCTG
CACCATCCTCAAGTGGGACTATGTGGAACGACAGCTTCGAGACTATGACAGAATTCCAGCCCCTTCAGCT
GTGCACTGCAAGCCGATGGTGGTGGATGGCCAGCTCTATGTCGTTGTGGCCCAGCTGTTTGGTGGCTCAT
ACATTTACCACTGGGACCCCAACACCACACGTTTCACCAAGTTGCAGGACATCGACCCACAGCGCGTGCG
CAAACCCAATGACCTGGAAGCCTTCCGCATCGACGGTGACTGGTTTTTCGCAGTGGCTGACAGCTCCAAG
GCAGGTGCCACCAGCCTCTACCGTTGGCACCAGAATGGCTTCTATTCCCACCAGGCCCTGCACGCCTGGC
ACCGCGACACCGACCTGGAGTTTGTGGACGGTGAGGGCAAACCACGGTTAATTGTGTCTAGCAGCTCGCA
AGCACCTGTCATCTATCAATGGAGTCGTTCTCAGAAACAGTTTGTGGCTCAGGGAGAGGTGACTCAGGTA
CCTGATGCCCAGGCCGTGAAACACTTTCGTGCTGGCCGAGACAGCTACCTGTGCCTTAGCCGCTACATTG
GCGACTCCAAGATCCTGCGCTGGGAAGGTACCCGTTTCTCTGAGGTGCAAGCCCTTCCCTCCCGAGGCTC
GCTGGCCCTACAGCCCTTCCTGGTGGGTGGTCACCGCTACCTGGCCCTGGGCAGTGACTTCTCCTTCACC
CAGATCTACCAGTGGGATGAGGGGCGACAGAAATTTGTACGGTTCCAAGAGCTGGCAGTACAGGCACCCC
GGGCCTTCTGCTACATGCCTGCTGGAGATGCCCAGCTGCTCCTGGCCCCCAGTTTCAAGGGACAAACACT
GGTGTACCGACATGTTGTGGTGGACCTTAGTGCCTAG

Translation (548 aa):
MAGLRARRGPGRRLLVLSTLGFCLMLQVSAKRPPKTPPCPPSCSCTRDTAFCVDSKSVPKNLPSEVISLT
LVNAAFSEIQDGAFSHLPLLQFLLLNSNKFTLIGDNAFIGLSHLQYLFIENNDIWALSKFTFRGLKSLTH
LSLANNNLQTLPRDIFRPLDILSDLDLRGNALNCDCKVKWLVEWLAHTNTTVAPIYCASPPRFQEHKVQD
LPLREFDCITTDFVLYQTLSFPAVSAEPFLYSSDLYLALAQPGASACTILKWDYVERQLRDYDRIPAPSA
VHCKPMVVDGQLYVVVAQLFGGSYIYHWDPNTTRFTKLQDIDPQRVRKPNDLEAFRIDGDWFFAVADSSK
AGATSLYRWHQNGFYSHQALHAWHRDTDLEFVDGEGKPRLIVSSSSQAPVIYQWSRSQKQFVAQGEVTQV
PDAQAVKHFRAGRDSYLCLSRYIGDSKILRWEGTRFSEVQALPSRGSLALQPFLVGGHRYLALGSDFSFT
QIYQWDEGRQKFVRFQELAVQAPRAFCYMPAGDAQLLLAPSFKGQTLVYRHVVVDLSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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