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Report for CCDS28493.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28493.1 Public Mus musculus 17 Tbl3 23 108 98 CCDS HistoryNCBI Gene:213773Re-query CCDS DB by CCDS ID:28493.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28493.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000126319.7 ENSMUSP00000120911.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126319.7Link to Ensembl Protein Viewer:ENSMUSP00000120911.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000126319Re-query CCDS DB by Protein ID:ENSMUSP00000120911
Original member Current member NCBI NM_145396.4 NP_663371.2 Accepted alive Link to Nucleotide Sequence:NM_145396.4Link to Protein Sequence:NP_663371.2Re-query CCDS DB by Nucleotide ID:NM_145396Re-query CCDS DB by Protein ID:NP_663371Link to BLAST:NP_663371.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663371.2 801 Q8C4J7 801 100% 0 0

Chromosomal Locations for CCDS 28493.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24700673 24700785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24700876 24701034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24701120 24701191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24701280 24701383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24701603 24701661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24701742 24701898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24701977 24702047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24702145 24702375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24702476 24702623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24703238 24703341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24703992 24704050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24704136 24704277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24704367 24704548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24704632 24704725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24704811 24704886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24705147 24705317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24705397 24705481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24705565 24705706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24705801 24705848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24705935 24706030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24706115 24706166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24707524 24707564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2406 nt):
ATGGCCGAGACTGCGGCGGGATTGTGCCGCTTCAAAGCCAACTATGCTGTTGAGCGAAAGATTGAACCTT
TCTACAAGGGTGGGAAAGCACAGCTGGACCAGACTGGCCATTACCTCTTCTGTGTCTGTGGTACCAAAGT
TAACATCCTGGATGTGGCCTCAGGGGCTTTGCTTCGGAGCCTGGAGCAGGAGGACCAAGAGGACATTACC
TCCTTTGACCTCAGTCCTGATGATGAAGTACTCGTAACAGCCAGCCGCGCACTGCTGCTGGCTCAGTGGG
CCTGGCGGGAAGGCACTGTCACTCGCCTGTGGAAGGCGATACACACAGCTCCTGTGGCCTCCATGGCTTT
TGATGCCACCTCTACACTGTTAGCCACAGGCGGCTGTGATGGGGCTGTACGTGTTTGGGACATTGTGCAA
CATTACGGGACACACCACTTTCGAGGCTCACCTGGTGTGGTGCATTTGGTGGCCTTCCATCCAGACCCCA
CCCGCCTGCTGCTCTTCTCCTCAGCTGTGGACACCTCTATCCGCGTGTGGTCACTGCAGGACCGCTCATG
TTTGGCTGTCCTGACTGCACACTATAGTGCTGTCACTTCTCTGTCCTTTAGTGAGGGTGGCCACACTATG
CTCAGCTCTGGCCGTGACAAGATCTGCATAGTTTGGGACCTTCAGAGCTACCAGACTACAAGGACGGTGC
CAGTGTTTGAGAGCGTGGAAGCCTCTGTGCTACTGCCCGAACAGCCGGCACCTGCGCTGGGTGTGAAGAG
CTCAGGCCTGCACTTCTTAACAGCTGGTGACCAAGGGATCCTTCGTGTGTGGGAGGCCGCTTCTGGGCAG
TGTGTATACACCCAGCCACAAATGCCAGGCCTACGGCAGGAACTGACCCACTGTACCCTGGCCCGTGCTG
CTGACCTGCTCCTCACTGTCACTGCCGATCACAACCTGCTCCTCTATGAGGCACACTCCTTACAGTTGCA
GAAACAGTTTGCTGGCTATAGTGAGGAAGTATTGGATGTTCGCTTCCTGGGGCCCAGTGACTCCCACATC
GTCGTGGCTTCCAACAGCCCTTGCCTGAAGGTGTTTGAGCTGCAGACTTTGGCTTGTCAGATCCTCCATG
GTCACACAGACATTGTCTTGGCCCTGGATGTGTTCCGGAAGGGGTGGCTCTTTGCTAGCTGTGCCAAGGA
TCAGAGCATACGCATCTGGAAGATGAACAAGGCTGGCCAGGTGGCCTGTGTAGCTCAGGGTTCTGGCCAC
ACACATAGTGTGGGCACCATCTGCTGTTCTAGGCTAAAAGAATCTTTCCTGGTGACTGGCAGTCAGGACT
GTACTGTGAAGCTCTGGCCTCTCCCTGAAGCTCTGCTGGCCAAGAGCACAGCTGCAGACAGTGGCCCCGT
GCTTCTACAAGCCCAGACCACTCGGCGATGCCACGACAAAGACATCAACAGTTTGGCTGTCTCCCCCAAT
GACAAGCTGTTAGCAACAGGCTCACAGGATCGCACAGCTAAGCTCTGGGCCTTGCCTCAGTGCCAACTGT
TAGGTGTTTTTACAGGCCACCGACGTGGCCTCTGGAATGTCCAGTTCTCACCTACGGACCAGGTGCTGGC
CACAGCCTCTGCTGATGGTACCATCAAGCTCTGGGCACTGCAGGACTTCAGTTGCCTCAAGACATTTGAG
GGACACGATGCTTCTGTACTGAAGGTGGCCTTTGTAAGCCGTGGCTCACAGCTGCTGTCTAGTGGCTCTG
ATGGGCTCCTGAAGCTGTGGACCATTAAGAGCAACGAGTGTGTGCGGACCCTGGATGCTCACGAGGACAA
GGTCTGGGGACTACACTGCAGCCAACTGGATGATCATGCCATCACCGGTGGCAGTGACTCCCGAATCATT
CTCTGGAAGGATGTGACAGAAGCTGAGCAGGCAGAAGAGCAGGCCAAACGGGAAGAGCAGGTGATCAAGC
AGCAAGAACTGGACAACCTGCTCCATGAGAAGCGGTATCTCCGGGCACTAGGCCTTGCCATCTCTCTGGA
TCGTCCCCACACTGTGCTGACCGTTATCCAGGCCATCCGGAGAGATCCTGAGGCCTGTGAGAAGCTGGAA
GCCACTGTACTCCGACTGCGAAGAGACCAGAAAGAGGCCCTGCTGCGCTTCTGTGTCACGTGGAACACAA
ACTCCAGACATTGCCACGAAGCCCAGGCTGTGCTTGGTGTGCTGCTGCGGCACGAGGCTCCTGAGGAGCT
GCTGGCCTACGACGGGGTGCGGGGGTCACTGGAGGCCTTGCTGCCCTACACTGAGCGGCACTTTCAGCGG
CTTAGCAGGACACTGCAAGCAGCCACCTTCCTGGACTTCCTGTGGCACAACATGAAGCTGTCCCCATGCC
CTGCTGCAGCTCCCCCAGCCCTATGA

Translation (801 aa):
MAETAAGLCRFKANYAVERKIEPFYKGGKAQLDQTGHYLFCVCGTKVNILDVASGALLRSLEQEDQEDIT
SFDLSPDDEVLVTASRALLLAQWAWREGTVTRLWKAIHTAPVASMAFDATSTLLATGGCDGAVRVWDIVQ
HYGTHHFRGSPGVVHLVAFHPDPTRLLLFSSAVDTSIRVWSLQDRSCLAVLTAHYSAVTSLSFSEGGHTM
LSSGRDKICIVWDLQSYQTTRTVPVFESVEASVLLPEQPAPALGVKSSGLHFLTAGDQGILRVWEAASGQ
CVYTQPQMPGLRQELTHCTLARAADLLLTVTADHNLLLYEAHSLQLQKQFAGYSEEVLDVRFLGPSDSHI
VVASNSPCLKVFELQTLACQILHGHTDIVLALDVFRKGWLFASCAKDQSIRIWKMNKAGQVACVAQGSGH
THSVGTICCSRLKESFLVTGSQDCTVKLWPLPEALLAKSTAADSGPVLLQAQTTRRCHDKDINSLAVSPN
DKLLATGSQDRTAKLWALPQCQLLGVFTGHRRGLWNVQFSPTDQVLATASADGTIKLWALQDFSCLKTFE
GHDASVLKVAFVSRGSQLLSSGSDGLLKLWTIKSNECVRTLDAHEDKVWGLHCSQLDDHAITGGSDSRII
LWKDVTEAEQAEEQAKREEQVIKQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPEACEKLE
ATVLRLRRDQKEALLRFCVTWNTNSRHCHEAQAVLGVLLRHEAPEELLAYDGVRGSLEALLPYTERHFQR
LSRTLQAATFLDFLWHNMKLSPCPAAAPPAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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