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Report for CCDS18882.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18882.1 Public Mus musculus 4 Dnajc16 23 108 98 CCDS HistoryNCBI Gene:214063Re-query CCDS DB by CCDS ID:18882.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18882.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038014.10 ENSMUSP00000048714.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038014.10Link to Ensembl Protein Viewer:ENSMUSP00000048714.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000038014Re-query CCDS DB by Protein ID:ENSMUSP00000048714
Original member Current member NCBI NM_172338.2 NP_758841.1 Accepted alive Link to Nucleotide Sequence:NM_172338.2Link to Protein Sequence:NP_758841.1Re-query CCDS DB by Nucleotide ID:NM_172338Re-query CCDS DB by Protein ID:NP_758841Link to BLAST:NP_758841.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_758841.1 772 Q80TN4 772 100% 0 0

Chromosomal Locations for CCDS 18882.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 141763519 141763894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141764568 141764738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141766484 141766582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141766662 141766742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141767708 141767784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141767891 141768073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141769853 141770036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141770907 141771037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141774501 141774659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141775366 141775470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141776895 141777079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141782773 141783106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141784688 141784754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141788889 141789055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2319 nt):
ATGGAATTGAAAAGGTTGGGCGTGTCCTGGCGATTCTTGATGGTTCTGGTTCTGATCCTGCAAAGCCTGT
CTGCATTGGATTTTGACCCATACAGAGTCCTAGGGGTCAGCCGCACGGCCAGTCAGGCTGACATTAAAAA
GGCATATAAGAAGCTCGCTCGGGAATGGCATCCTGACAAAAACAAAGACCCTGGAGCCGAGGACAGGTTC
ATTCAGATCAGCAAGGCATACGAGATCCTGTCCAATGAGGAAAAGAGGACAAACTACGACCACTATGGTG
ATGCCGGTGAGAACCAAGGCTACCAGAAGCAGCAGCGCGAACACCGCTTCCGCCATTTCCACGAGAACTT
CTATTTTGATGAGTCCTTTTTCCACTTCCCCTTCAATGCGGAGCGGCGGGACTCGGGTGACGAGAAGTAC
TTGCTGCACTTCTCACACTACGTGAATGAAGTGCTTCCCGAGAGCTTCAAAAGACCCTACCTCATCAAGA
TCACGTCAGACTGGTGCTTCAGCTGCATCCATATCGAGCCTGTCTGGAAGGAGGTGGTCCAGGAACTGGA
AGGACTGGGTGTGGGGATTGGTGTCGTCCACGCTGGGTACGAAAGGCGCCTGGCCCATCACCTGGGAGCA
CACAGCACCCCCTCCATCCTTGGGGTCATCAGTGGGAAGATCACCTTCTTCCACAACGCAGTGGTCCATG
AAAACCTACGGCAGTTCGTGGAGAGTCTTCTCCCAGGAAACTTGGTAGAGAAGGTCACAAATAAAAATTA
TGTGCGGTTCCTCTCTGGCTGGCAGCAGGAGAATAAGCCACACGCCCTCCTGTTCGGCCAGACACCAGCA
GTGCCACTGATGTACAAGTTGACGGCCTTCGCATACAAGGATTATGTGTCGTTTGGATACGTGTATGTCG
GCTTGAGAGGTGTGGAAGAGATGACCAGGCAGTACAACGTCAACCTCTATACCCCCACCATGCTCATCTT
CAAAGAGCACATAAACAAGCCCGCTGATGTGATCCAGGCTCGGGGACTGAAGAAGCAGGTCATCGAGGAC
TTCATCGCCCAAAACAAGTACCTGCTGGCCTCCCGGCTCACCAGCCAGAGGTTGTTCCATGAACTCTGCC
CTGTGAAGCGGTCTCACCGACAGAGAAAATACTGCGTGGTTTTACTGACAGCTGAGACTAACAAAGTGAG
CAAACCCTTTGAAGCCTTCCTGTCATTTGCCCTGGCAAACACTCAAGACACGGTACGGTTCGTGCATGTC
TACAGCAACCGACAGCAGGAGTTTGCCAGCACATTGCTACCGGACATGGAAGCTTTCCAGGGGAAGTCAG
GGGTGTCCATCTTGGAAAGGAGGAACACAGCGGGGAGGGTGGTGTTCAAAACCCTGGAGGATCCCTGGAC
CGGCAGTGAGAGCGATAAGTTCGTCCTTTTGGGTTATCTTGACCAGCTGCGGAAGGATCCAGCATTTCTG
TCTTCAGAAGCTGTGCTCCCTGACCTGACTGACGAGCTGGCTCCTGTATTTTTCCTCCGGTGGCTCTACT
CTGTTTCTGACTACCTCTCGGACTTCTGGGAGAGCCTGCTTCACAGTAACTGGCGGGAGATGATGCCCCT
GCTGTCCCTCATCTTCTCGGCCCTCTTCATCCTCTTCGGCACGGTCATGGTCCAGGCTTTCAGTGACTCA
AATGAGGAGCGAGAGTCGCACCCTGCAGACAAAGAGGAAGTCCCCGAGAAGGCTGGGAAGACTGAGCCGA
GCTTCACCAAAGAGAGCAGCAGCAAGATTCCTAAGAAAGGCTTTGTGGAGGTGACTGAACTCACAGATGT
GACGTACACCAGCAATTTGGTACGCCTGAGGCCTGGTCACATGAATGTGGTCCTGATCCTGTCCAATTCC
ACTAAGACAAGCCTCCTGCAGAAGTTTGCTTTGGAAGTCTACACATTCACCGGGAGCAGCAGCCTCCACT
TCTCCTTCCTGACACTGGACAAACACCGGGAGTGGCTGGAGTATTTGCTAGAGTTTGCTCAGGATGCGGC
CCCGATCCCAAACCAGTATGACAAGCACTTTATGGAACGAGACTACACTGGCTACGTGCTGGCCCTGAAC
GGTCACAAGAAGTATTTCTGCCTTTTCAAGCCACTAAAGACAGTGGATGAGGAGACTGTGGCCTCCTGTG
ACCCTGACTCCTCCCGAGGGAAGCCTTCCTGTGGCCTTGGCCCCAAGCCCCTCAAAGGCAAGCTGAGCAA
GTTGTCCTTGTGGATGGAGCGCCTGCTGGAAGGCTCCTTGCAGAGGTTCTACATCCCGTCGTGGCCTGAG
CTGGACTGA

Translation (772 aa):
MELKRLGVSWRFLMVLVLILQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRF
IQISKAYEILSNEEKRTNYDHYGDAGENQGYQKQQREHRFRHFHENFYFDESFFHFPFNAERRDSGDEKY
LLHFSHYVNEVLPESFKRPYLIKITSDWCFSCIHIEPVWKEVVQELEGLGVGIGVVHAGYERRLAHHLGA
HSTPSILGVISGKITFFHNAVVHENLRQFVESLLPGNLVEKVTNKNYVRFLSGWQQENKPHALLFGQTPA
VPLMYKLTAFAYKDYVSFGYVYVGLRGVEEMTRQYNVNLYTPTMLIFKEHINKPADVIQARGLKKQVIED
FIAQNKYLLASRLTSQRLFHELCPVKRSHRQRKYCVVLLTAETNKVSKPFEAFLSFALANTQDTVRFVHV
YSNRQQEFASTLLPDMEAFQGKSGVSILERRNTAGRVVFKTLEDPWTGSESDKFVLLGYLDQLRKDPAFL
SSEAVLPDLTDELAPVFFLRWLYSVSDYLSDFWESLLHSNWREMMPLLSLIFSALFILFGTVMVQAFSDS
NEERESHPADKEEVPEKAGKTEPSFTKESSSKIPKKGFVEVTELTDVTYTSNLVRLRPGHMNVVLILSNS
TKTSLLQKFALEVYTFTGSSSLHFSFLTLDKHREWLEYLLEFAQDAAPIPNQYDKHFMERDYTGYVLALN
GHKKYFCLFKPLKTVDEETVASCDPDSSRGKPSCGLGPKPLKGKLSKLSLWMERLLEGSLQRFYIPSWPE
LD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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