NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21914.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21914.1 Public Mus musculus 7 Pstk 23 108 98 CCDS HistoryNCBI Gene:214580Re-query CCDS DB by CCDS ID:21914.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21914.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075610.12 ENSMUSP00000075037.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075610.12Link to Ensembl Protein Viewer:ENSMUSP00000075037.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000075610Re-query CCDS DB by Protein ID:ENSMUSP00000075037
Original member Current member NCBI NM_001039534.1 NP_001034623.1 Accepted alive Link to Nucleotide Sequence:NM_001039534.1Link to Protein Sequence:NP_001034623.1Re-query CCDS DB by Nucleotide ID:NM_001039534Re-query CCDS DB by Protein ID:NP_001034623Link to BLAST:NP_001034623.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034623.1 359 Q8BP74-1 359 100% 0 0

Chromosomal Locations for CCDS 21914.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 131371174 131371389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131373536 131373830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131374065 131374263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131383925 131384000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131384500 131384593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131387618 131387817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGAAGACCGCGGCGGCTCGTGGGGCCACTCGCAGAGACGGACAGCCCAAACTAGGACTGTGCGTCCTCT
GCGGCTTGCCGGCGGCCGGAAAGTCGACTTTTGCACGTGCGCTGGCCCTCCGCCTGCGGCGGGAGCGGGG
TTGGGCCGTGGGCGTCCTCTCCTACGACGATGTGCTGCCTCTTGCGCTCCCGGACTGCGATGGCACACAG
CCTCGGCCATCCCAGTGGAAAATGTTCCGACAAGAACTGTTAAAGCACCTGGAATGCTTCCTCGTGGCGG
TCATTAGTGGGGCTCAGATGTCTGCCCCACCCAACAGGACTGAGGCCGTGTGGGAAGACTTCATAACCTG
CTTAAAAAGTCAGGATTTGATGATCTTTCCTACAGCACTAGAGGCCCAGCCTTGCCACCTCTTGGCAAAA
CCTGCTGTTTCTAGACCTTTGTTTTTGGTGTTAGATGACAACTTTTATTACCAAAGTATGAGATATGAAG
TCTACCAACTGGCTCGGAAATATTCGCTAGGCTTTTGCCAGCTCTTTTTAGACTGTCCCCTGGAGACATG
TTTGAAGAGGAATGGTGAGAGGTCCCAGCCACTGCCTGACGAGACCATCCAGCTCATGGGGAGAAAGATA
GAGAAGCCCAACCCTGAGAAAAATGCCTGGGAACACAACAGCCTCATAATTCAGAGTTCAGCATGTTCTC
TGGAAGCCAGCCTGGAGGTGACTGGTTTGTTGCTTACTGCATTGGAAAATCCCATAAAATGTGTTGAGGA
TAATACAGAACAAAAGGAAACTGACAGAATTATCTGTTCTACTAACATCCTTCATAAAGCTGATGAGACA
CTCCGAAGAACTGTCTCTCAGACGATGAGGGAAGCCAAAGATGAACAAATACCTCTTAATAACTTGAAGC
ATCTAGCAGAAGAACTTAACAAGCTCAAAGCAGATGTTTTGGAAGATCTAAGACAAGGAAATAGAAAATA
TCTGTGCTTTCAGCAAACCACTGACTTATCAGATATTATTTCTTCTTTTTGTAAGGAGAGAGATACTATT
GTGCAGAAGTATTTTTCAAAGCAACATTAA

Translation (359 aa):
MKTAAARGATRRDGQPKLGLCVLCGLPAAGKSTFARALALRLRRERGWAVGVLSYDDVLPLALPDCDGTQ
PRPSQWKMFRQELLKHLECFLVAVISGAQMSAPPNRTEAVWEDFITCLKSQDLMIFPTALEAQPCHLLAK
PAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCPLETCLKRNGERSQPLPDETIQLMGRKI
EKPNPEKNAWEHNSLIIQSSACSLEASLEVTGLLLTALENPIKCVEDNTEQKETDRIICSTNILHKADET
LRRTVSQTMREAKDEQIPLNNLKHLAEELNKLKADVLEDLRQGNRKYLCFQQTTDLSDIISSFCKERDTI
VQKYFSKQH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH