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Report for CCDS30231.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30231.1 Public Mus musculus X Slc10a3 23 108 98 CCDS HistoryNCBI Gene:214601Re-query CCDS DB by CCDS ID:30231.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30231.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037967.5 ENSMUSP00000045150.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037967.5Link to Ensembl Protein Viewer:ENSMUSP00000045150.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000037967Re-query CCDS DB by Protein ID:ENSMUSP00000045150
Original member Current member EBI ENSMUST00000073067.10 ENSMUSP00000072818.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073067.10Link to Ensembl Protein Viewer:ENSMUSP00000072818.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000073067Re-query CCDS DB by Protein ID:ENSMUSP00000072818
Original member Current member EBI ENSMUST00000114146.7 ENSMUSP00000109783.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114146.7Link to Ensembl Protein Viewer:ENSMUSP00000109783.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114146Re-query CCDS DB by Protein ID:ENSMUSP00000109783
Original member Current member NCBI NM_001256104.1 NP_001243033.1 Accepted alive Link to Nucleotide Sequence:NM_001256104.1Link to Protein Sequence:NP_001243033.1Re-query CCDS DB by Nucleotide ID:NM_001256104Re-query CCDS DB by Protein ID:NP_001243033Link to BLAST:NP_001243033.1
Original member Current member NCBI NM_145406.2 NP_663381.1 Accepted alive Link to Nucleotide Sequence:NM_145406.2Link to Protein Sequence:NP_663381.1Re-query CCDS DB by Nucleotide ID:NM_145406Re-query CCDS DB by Protein ID:NP_663381Link to BLAST:NP_663381.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243033.1 473 P21129 473 100% 0 0
NP_663381.1 473 P21129 473 100% 0 0

Chromosomal Locations for CCDS 30231.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 74369451 74370872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGGTGGTCAAGAAAAGCAGAGGTAGCTCCCAGCAGTTGCCTGGCCTGGGAGGACAGGGTGGTTGTACAG
GTTTTGTAGGCATGCTTGGAACTGCCCTGCTGTTCATCAGCCTACCATGGGGAGCTCAAGTGATGGCCAG
TGCCAACATCAGCACTGCTCTGGGCCACACAAGTGGTCACTATTTGAGTATTGGGGATGGCTCAGTGACA
GAATTTGATTTCCCTGAGAAGAGTGAGGGTATCATTGTGATCTCTAGCCAATACACTGGACAGACCAATG
GGACAGGCCCCAGCCCCATACTTAAGGTTATATCCCTGGACACAGAGGTGCTGACCATTAAGAATGTGAG
TGCCATAACCTGGAGCAGTGGAGGTGGCTTTGTGGTAGGCATCCACTCAGGTCTAGCTGGGCTGGCCCCA
CTCCACCTCCAGCTCATGGATTTCTATGAGGCCCCACCCCTGCTGATCGAAGAACGGAGAGATTTCTGCA
TCAGGGTGTCACCTGCTGAAGACCTCCCTTCTGCTCTCAACACCAACTTGGGCCACTTCTCAGAGAACCC
AATACTCTACTTGCTTCTGCCTCTTATCTTTGTCAACAAGTGTTCATTTGGTTGCAAAGTGGAACTTGAA
GTTTTGAAGGAGCTCCTACAGAGCCCCCAACCCATGCTGTTGGGCCTCTTGGGCCAGTTTCTGGTCATGC
CTTTCTATGCTTTCCTGATGGCCAAAGTCTTCATGCTACCCAAGGCCTTAGCTCTGGGCCTCATCATTAC
CTGCTCATCACCTGGTGGTGGAGGGAGCTACCTCTTCAGTCTCCTCCTTGGAGGAGATGTCACCCTGGCC
ATCTCCATGACTTTCATCTCAACAGTAGCTGCCACTGGTTTCCTACCACTCTCATCAGCCATCTACAGCT
ACCTTCTCAGCATCCATGAAACACTCCACGTGCCCATCTCCAAGATATTGGGGACCCTGCTGTTTATCGC
CATCCCCATAGCAGCGGGTGTGGTGATCAAATCTAAGCTCCCCAAGTTCTCTGAACTACTGTTACAGGTC
ATCAAGCCCTTCAGCTTTATACTTCTCCTGGGTGGCCTGTTCCTGGCCTACCACATGGGGGTCTTCATCC
TAGTGGGAGTCAGGTTACCCATTGTACTGGTGGGTTTCACAGTGCCTCTTGTTGGCCTCTTGGTGGGCTA
CAGCCTGGCCATCTGCCTGAAGCTGCCAGTGGCTCAGCGACGAACAGTCAGCATTGAGGTAGGGGTGCAA
AACAGCCTGCTAGCCTTAGCCATGCTACAGCTGTCTCTGCGCCGCCTTCAAGCAGACTATGCCTCTCAGG
CCCCTTTCATTGTGGCACTGAGTGGTACCTCCGAGATGTTGGCTTTGGTTATTGGCCAGTTCATCTATAG
CATCTTGTTTCCTGTTCCCTGA

Translation (473 aa):
MVVKKSRGSSQQLPGLGGQGGCTGFVGMLGTALLFISLPWGAQVMASANISTALGHTSGHYLSIGDGSVT
EFDFPEKSEGIIVISSQYTGQTNGTGPSPILKVISLDTEVLTIKNVSAITWSSGGGFVVGIHSGLAGLAP
LHLQLMDFYEAPPLLIEERRDFCIRVSPAEDLPSALNTNLGHFSENPILYLLLPLIFVNKCSFGCKVELE
VLKELLQSPQPMLLGLLGQFLVMPFYAFLMAKVFMLPKALALGLIITCSSPGGGGSYLFSLLLGGDVTLA
ISMTFISTVAATGFLPLSSAIYSYLLSIHETLHVPISKILGTLLFIAIPIAAGVVIKSKLPKFSELLLQV
IKPFSFILLLGGLFLAYHMGVFILVGVRLPIVLVGFTVPLVGLLVGYSLAICLKLPVAQRRTVSIEVGVQ
NSLLALAMLQLSLRRLQADYASQAPFIVALSGTSEMLALVIGQFIYSILFPVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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