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Report for CCDS45980.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45980.1 Public Homo sapiens 19 ECSIT 24 110 108 CCDS HistoryNCBI Gene:51295Re-query CCDS DB by CCDS ID:45980.1Re-query CCDS DB by GeneID:51295See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45980.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252440.11 ENSP00000252440.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000252440.11Link to Ensembl Protein Viewer:ENSP00000252440.6Re-query CCDS DB by Nucleotide ID:ENST00000252440Re-query CCDS DB by Protein ID:ENSP00000252440
Original member Current member NCBI NM_001142464.3 NP_001135936.1 Accepted alive Link to Nucleotide Sequence:NM_001142464.3Link to Protein Sequence:NP_001135936.1Re-query CCDS DB by Nucleotide ID:NM_001142464Re-query CCDS DB by Protein ID:NP_001135936Link to BLAST:NP_001135936.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135936.1 296 Q9BQ95-2 296 100% 0 0

Chromosomal Locations for CCDS 45980.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11507468 11507562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11507991 11508048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11513056 11513279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11513804 11514221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11519075 11519170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGAGCTGGGTCCAGGCCACCCTACTGGCCCGAGGCCTCTGTAGGGCCTGGGGAGGCACCTGCGGGGCCG
CC
CTCACAGGAACCTCCATCTCTCAGGTCCCTCGCCGGCTCCCTCGGGGCCTCCACTGCAGCGCAGCTGC
C
CATAGCTCTGAACAGTCCCTGGTTCCCAGCCCACCGGAACCCCGGCAGAGGCCCACCAAGGCTCTGGTG
CCC
TTTGAGGACCTGTTTGGGCAGGCGCCTGGTGGGGAACGGGACAAGGCGAGCTTCCTGCAGACGGTGC
AG
AAATTTGCGGAGCACAGCGTGCGTAAGCGGGGCCACATTGACTTCATCTACCTGGCCCTGCGCAAGAT
G
CGGGAGTATGGTGTCGAGCGGGACCTGGCTGTGTACAACCAGCTGCTCAACATCTTCCCCAAGGAGGTC
TTC
CGGCCTCGCAACATCATCCAGCGCATCTTCGTCCACTACCCTCGGCAGCAGGAGTGTGGGATTGCTG
TC
CTGGAGCAGATGGAGAACCACGGTGTGATGCCCAACAAGGAGACGGAGTTCCTGCTGATTCAGATCTT
T
GGACGCAAAAGCTACCCCATGCTCAAGTTGGTGCGCCTGAAGCTGTGGTTCCCTCGATTCATGAACGTC
AAC
CCCTTCCCAGTGCCCCGGGACCTGCCCCAGGACCCTGTGGAGCTGGCCATGTTTGGCCTGCGGCACA
TG
GAGCCTGACCTTAGTGCCAGGGTCACCATCTACCAGGTTCCTTTGCCCAAAGACTCAACAGGTGCAGC
A
GATCCCCCCCAGCCCCACATCGTAGGAAGTGGAAGAGACGCCGGAGGAGTGGAACCTCTACTACCCGAT
GCA
GCTGGACCTGGAGTATGTGAGGAGTGGCTGGGACAACTACGAGTTTGA


Translation (296 aa):
MSWVQATLLARGLCRAWGGTCGAALTGTSISQVPRRLPRGLHCSAAAHSSEQSLVPSPPEPRQRPTKALV
P
FEDLFGQAPGGERDKASFLQTVQKFAEHSVRKRGHIDFIYLALRKMREYGVERDLAVYNQLLNIFPKEV
F
RPRNIIQRIFVHYPRQQECGIAVLEQMENH
GVMPNKETEFLLIQIFGRKSYPMLKLVRLKLWFPRFMNV
N
PFPVPRDLPQDPVELAMFGLRHMEPDLSARVTIYQ
VPLPKDSTGAADPPQPHIVGSGRDAGGVEPLLPD
A
AGPGVCEEWLGQLRV




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser