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Report for CCDS78873.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78873.1 Public Mus musculus 10 AU041133 23 108 98 CCDS HistoryNCBI Gene:216177Re-query CCDS DB by CCDS ID:78873.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78873.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000201286.3 ENSMUSP00000144661.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201286.3Link to Ensembl Protein Viewer:ENSMUSP00000144661.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201286Re-query CCDS DB by Protein ID:ENSMUSP00000144661
Original member NCBI NM_001163064.1 NP_001156536.1 Updated not alive Link to Nucleotide Sequence:NM_001163064.1Link to Protein Sequence:NP_001156536.1Re-query CCDS DB by Nucleotide ID:NM_001163064Re-query CCDS DB by Protein ID:NP_001156536
Current member NCBI NM_001163064.2 NP_001156536.1 Accepted alive Link to Nucleotide Sequence:NM_001163064.2Link to Protein Sequence:NP_001156536.1Re-query CCDS DB by Nucleotide ID:NM_001163064Re-query CCDS DB by Protein ID:NP_001156536Link to BLAST:NP_001156536.1

Chromosomal Locations for CCDS 78873.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 82128096 82128098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82138253 82138379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82150217 82150277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 82150706 82152011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1497 nt):
ATGGCTGCAGTGACCTATGAAGATGTGCATGTGAACTTCACTCACGAAGAGTGGGTTTTGCTGGATCCTT
CCCAGAAGAGTCTCTACAAAGATGTGATGCTGGAAACCTACTGGAACCTCACTGCTATAGGATACAAATT
GGAAGACCTGAATAGTGAGGAACACTCTCAGCGCTCTAGAAGATATGGAAGACATAAGATCTGTCACTCT
GAATACAAGCCTTGTGAACTTAAGGGATATGGAAAGAAGCAATGTACCTTTGCAGATAAAAGGTTTCTTC
AAATATATGGAAGAATCCATACTGAAGGGAAACCCTATGAATGTAAGCAATGCAGTCAAATCTTCACAAA
TTTCTGTCATCTTCGAAAACATGAAAAAAAACATACTAAAGAAAAACTATATGAATGTAATCACTGTGGT
AAATCCTTTCCAAGTCGCAATTCTCTTCAAATACACAACAGAACTCATACAGGAGAGAAACCCTATGATT
GCAACGAGTGTGGTAAAGCATTTACATGTAGCAGTAATCTACTACTACACAAAAGAACTCATACAGGAGA
GAAACCCTATGATTGCAGTGACTGTGGTAAAGCGTTTGCAAGTAGCAGTAATCTTCAGATTCATAAAAGA
AAGCACACTGGAGAGAAACCCTATGGATGTAACCAATGTGGTAAAGCCTTTGCATATAGTAATGCTCTTC
AAAAACATGAAAGAAGTCATACTAGAGAGAAAATCTATGAGTGTAATCAATGTGGTAAAGCCTTTGCACG
TCATAGAAGTCTTCAAAATCATGAAGAACATCATACTCTTGAAAAACCATATGAATGTAGTCAATGTGGT
AAGGCCTTTGCATATAGCAGTAATCTTTATATACACGAAAGAAGTCATACTGGAGAAAAGCCATTCAAAT
GTACTCAATGTGGTAAAGCCTTTCCAAGTCACAGTTCTCTTCAAATACATGAAAGAACGCATACAGGAGA
GAAACCCTATGACTGTAATGAATGTGGTAAAGCCTTTGCATGTCGCAGTAATCTTCTACTACACAAGAGA
ACTCATACAGGAGAGAAACCCTATCATTGCATAGAATGTGGTAAAGCGTTTGCATGTAGCAGTAGTCTTC
AAAAACATGAAAAAACTCACACTGGAGAGAAACCTTATGAATGTAATCAATGTGGCAAAGCCTTTGCACG
TCGAAGTGATCTGTATATACACGAAAGAATCCATACTGGAGAGAAACCATATGAGTGTAATCAATGTGGA
AAAGCGTTTGTACATTGCATTAGTCTTCAGAGGCATGAACGAACTCACACTGGAGAGAAACCTTATGAAT
GTAATCAATGCGGTAAAGCCTTTACACGTCGCTTTAGTCTTCAGGTACATGAAAGAAGTCACAGTGGAGA
GAAACCTTATGAGTGTAATCAATGTGGTAAAGCCTTTGCAAGTCGTAGTAGTCTTCGATATCATAGAAAA
CATCATACTGCTAAGAAACCAAATTAA

Translation (498 aa):
MAAVTYEDVHVNFTHEEWVLLDPSQKSLYKDVMLETYWNLTAIGYKLEDLNSEEHSQRSRRYGRHKICHS
EYKPCELKGYGKKQCTFADKRFLQIYGRIHTEGKPYECKQCSQIFTNFCHLRKHEKKHTKEKLYECNHCG
KSFPSRNSLQIHNRTHTGEKPYDCNECGKAFTCSSNLLLHKRTHTGEKPYDCSDCGKAFASSSNLQIHKR
KHTGEKPYGCNQCGKAFAYSNALQKHERSHTREKIYECNQCGKAFARHRSLQNHEEHHTLEKPYECSQCG
KAFAYSSNLYIHERSHTGEKPFKCTQCGKAFPSHSSLQIHERTHTGEKPYDCNECGKAFACRSNLLLHKR
THTGEKPYHCIECGKAFACSSSLQKHEKTHTGEKPYECNQCGKAFARRSDLYIHERIHTGEKPYECNQCG
KAFVHCISLQRHERTHTGEKPYECNQCGKAFTRRFSLQVHERSHSGEKPYECNQCGKAFASRSSLRYHRK
HHTAKKPN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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