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Report for CCDS25589.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25589.1 Public Mus musculus 11 Abca9 23 108 98 CCDS HistoryNCBI Gene:217262Re-query CCDS DB by CCDS ID:25589.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25589.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044850.3 ENSMUSP00000036338.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044850.3Link to Ensembl Protein Viewer:ENSMUSP00000036338.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000044850Re-query CCDS DB by Protein ID:ENSMUSP00000036338
Original member Current member NCBI NM_147220.2 NP_671753.2 Accepted alive Link to Nucleotide Sequence:NM_147220.2Link to Protein Sequence:NP_671753.2Re-query CCDS DB by Nucleotide ID:NM_147220Re-query CCDS DB by Protein ID:NP_671753Link to BLAST:NP_671753.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_671753.2 1623 Q8K449 1623 100% 0 0

Chromosomal Locations for CCDS 25589.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 110101965 110102063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110102511 110102566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110106524 110106603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110107130 110107270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110107465 110107584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110108652 110108746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110108821 110108896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110110287 110110447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110113192 110113283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110114224 110114341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110115444 110115564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110117059 110117150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110118081 110118149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110120664 110120783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110127361 110127474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110130565 110130738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110131767 110131874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110134180 110134317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110135335 110135468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110136038 110136204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110138134 110138329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110139519 110139638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110141509 110141648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110144199 110144289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110144743 110144881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110145079 110145198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110145491 110145666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110146908 110147018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110147215 110147273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110148741 110148909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110151946 110152093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110154378 110154563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110155155 110155296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110158181 110158407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110158954 110159057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110160400 110160564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110163171 110163378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 110165897 110165992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4872 nt):
ATGAGGAAGAGACACTTGAGACTGGGTCAGCAAATGTGGGCGCTTCTCTGCAAGAACTGGCTCAGAAAGT
TCAGGATGAGAAGAGAGACCCTCCTGGAATGGCTTTTCTCACTTCTTCTAATATTGTTTGTATATCAATT
ATCCTCCAATTTGCATCAAGTTCATGACGCTCCTGAAATGTCTGTGGTGGATCTGGGACGTGTTGATAAC
TTTAACGATTCTAATTATATGATGGTGTTTGCTCCTGAGTCCGAAGCCACCCATGAGATAATGAACAAAG
TGGCCTCAGCTCCATTCATGAAAGGAAGAACAATTGTGGCATGTCCTGATGAAAAATCCATGAATGAGCT
AGACTTAAATTACTCGATAGATGCAGTGAGAGTCATCTTCAAGGACACTTTCTCATATCATTTGAAATTT
TCTTGGGGTCAGAGGATCCCTAAAACAAAAGAGCACAAAGACCATTCAGCTCCTTGTGAACCACTGAACA
ATAAAATGATTTGTGAAAACTCAGCCTTCTGGGAAAAGGGCTTTGTAGCCTTTCAAGCTGCCATTAATGC
TGGTATCATTGAGATGATCACAAACCACTCCGTGATGGAAGAGCTGATGTCTGTCATTGGTTCCAATATG
AAGATGCCGCCTTTTATTGCCCAAGGAGGAGTTGCAACTGATTTTTTTATTTTCTTCTGTGTTATTTCCT
TCTCTTCACTTATATACTATTTATCAGTCAATATTACTCAAGAAAGACAGTACATGACAACATTAATGGC
GATGATGGGGCTTCGAGAGTCGGCTTTCTGGCTTTCCTGGAGTCTGATGTATGCTGGCTTTATCCTTGTC
GTGGCTGTTTTGATGTCTCTTATTGTGAAATCTGCCCAAGTTGTCGTCTTAACTGGTTTCATGGTGGTGT
TCCTTCTGTTTCTCTTTTATGGCCTGTCTTTGATAACTTTATCTTTCCTCATGAGTGTGTTGATAAAGAA
ACCGTTTCTTACTGGCTTGGCTATCTTCATCCTTACCGTCTTCTGGGGAAGTCTGGGATTCACAGCGTTA
TACAAACATCTTCCTGCCTTTGTGGAATGGACCTTGTGTTTTCTTAGCCCCTTTGCCTTTACCACTGGAA
TGGCCCAGCTTATACATTTGGACTATGATGTGAATTCTAATGTAAATTTGAACTCTCCAAACAACTCGTA
CCTAATCATGGCCACGCTCTTCATGCTGGTTTTGGATGCTCTTCTCTATTTGGTACTGGCGTTATATTTT
GACAAAATTACACTCAGTAAGTACGGACATCAACGGTCTCCATTGTTTTTCCTGAAGTCGTCTTACTGGT
TTAAACGCAGAGGAGCTAGTCACGTGGTCCTTGAGAATGAAATAGATTCGGATCCCTCGCTGAATGACTC
ACTGGAACCAGTGTCTCCAGAATTCCAGGGGAAAGAAGCCATCAGGATCAAAAATCTTAAAAAAGAATAT
TCTGGAAAGCATGGGAAAGTAGAAGCCTTGAGAGGTCTGGGGTTTGACATATATGAAGGCCAGATCACTG
CCCTCCTTGGTCACAGTGGAGCTGGGAAAACCACCCTGATAAATACACTCAGTGGACTGTCACCCCCTAC
TACAGGTTCCGTCACCATTTATAACCAGACAGTTTCAGAGATGGACGACTCTGACGCCGTCCTCACGATC
ACTGGAGTTTGTCCACAGTCCAACGTACAGTTTGGCTTTCTCACCGTGCGAGAAAACCTCAGGCTTTTTG
CCAAGATAAAGGGAATTTTGCCACATGAAGTGGAACAAGAGGTACAACAAGTTCTACAGGACTTAGAAAT
GGAAAATATTCAAGACATTCTTGCTCAGAATTTAAGTGGCGGACAAAAAAGGAAGTTGACTCTTGGGATC
GCCATTTTAGGAGACCCCCAGGTTTTGCTCCTGGATGAACCAACTGCTGGGTTGGATCCACTCTCGAGGC
ATCGCATATGGAACCTACTGAAAGAGAGGAGAGCAGGCAGAGTAATTGTCTTCAGTACTCAGTTCATGGA
TGAGGCTGATATCCTGGCCGACAGGAAGGTGTTTATATCCAATGGGAGACTGAAGTGTGCGGGCTCTTCT
CTGTTCCTGAAGAAGAAATGGGGCATTGGCTATCATCTAAGTTTGCATTTGAATGAAGCGTGTGATCCAG
AGGGTATAACGTCACTGGTCAAAAAGCACATCTCCGACGCCAGGCTGACCACGCAAAGCGAAGAACGGCT
TGTCTATATCTTGCCCCTGGAAAGGACAAACAAGTTTCCAGACCTTTACCGGGATCTTGATAGATGTTCT
AACCAAGGCATTGAGGATTATGGCGTTTCCATGACAACCCTGAATGAGGTGTTCCTGAAGTTAGAAGGGA
AGTCGATGGCTGATGAATCAGATGTTGGAATTTGTGGGCGCTTACAAAGCGATGGGGCAAGAGACATGGA
AAGCCTCGTTGAGCTGGAGCAAGTGTTGTCTTTAGATTCGTCAGGAAGCTCAGTGAGTGGCATGGCGCTG
TGGAGGCAGCAGCTCTGCGCAGTCGCGAAGGTTCGCTTCTTCAAGCTCAAGAATGAACGGAAAAGTCTGA
TGACTGTGTTATTGCTTTTTGGCATTAGCTTTGTCCCCCAACTTTTGGAACATCTCGTCTACAAGGTATA
CCACAAAAGTTATTCATGGGGGCTATCTCCAAGTATGTATTTCCTTTCACCAGGACAGCCACCACAGGAT
CCTCTGACCCACTTACTGGTCATCAATAGAACAGGTTCAAGCATCGATAACTTTGTACACGCACTAAGAC
AGCAGGGCATAGCATTAGACCTGGATGCCCTGGGGACCAGAAATGGCACAGAAGAGGCGCTGTACAATGG
TGCTATCACGGTGCTGGGTGAAGAAAAGGCTCTCAGATTTTCCGTAGCGTGTAATGCCAAAAGACTAAAC
TGCTTCCCAGTCCTCATGGATATTATTAGCAATGGGCTGCTTGGAATATTTAACTCTTCTGAACGCATCC
AGACCGACAGAAGCACAGTCTTTGAAGAACACATGCTTTATGAGTACGGATTCATGAGCAACGCATTTTT
CTGGATACCAGTGGCTGCCAGCCTCACCCCTTACATTGCGATGGGCAGCATCAGTGACCACAAAAAAAAA
GTTCTTTCCCAGCTGTGGACTTCAGGCCTTTACCCGTCTGCTTACTGGTGTGGACAGGCTCTGGTGGACA
TTCCCATATACTTCCTCATTCTCTTTCTCATGCAAATAATGGACAGTGTTTTTAGTTCTGAGGAGTTTAT
ATCTGTGATGGAGAGCCTGTTGATTCAGATCCCATGTAGTATTGGCTATGCATCATCTCTCATATTCATG
ACTTATGTGATTTCATTCATTTTTCGTAATGGCAGAAAAAATAGTGGCATCTGGTCATTTTTCTTCCTAA
TTGTCACCATCTTCTTTATCATTGCTACTGACATAAATGAATACGGCTTTCTAGAGCTGCTAATCTGCAC
CTTTTTAGTCCCTCCTTTCACACTGATTGGCTCACTATTGATTTTTTCTGAGGTTTCCTATGACTCTGTG
GATTACTTGGGAACGTCAGAATCTCAACTCGTATTTCTGGCATTGCTGATACCTTACCTTCACTTTCTTC
TTTTCTTTTTCATTCTGCGATGTCTGGAAAGATACCTCAGGAAGAAGTCACTGAGAGTGGACCCTGTGTT
CAGAATTTCTCCGAGAAGTTGTCCTGCTGTTCCGAACCCAGAAGAGCCCGGAGAAGAGGATGAAGATGTT
CAGATGGAAAGAGTGAGAACAACGGGCGCCATGGCTACCCTACAGACTGATGAGAAACCAGTCATCATTG
CAAGCTGTCTGCGGAAGGAATATATAGGCAGAACGAAAAGGTGCTTTTCCAAAATGAAGAAAAAGATCGC
CACGAGGAACATCTCCTTCTGTGTTAAAAAAGGTGAAGTCCTAGGGCTCTTAGGACACAATGGAGCTGGC
AAAAGTACAACAATTAGCATGATAACAGGAGACACAATACCAACCGCAGGTCAGGTGTTTTTGAAAGGGA
GCGGTGGGGGTGCTGCCCTCGGATTCTTGGGGTACTGCCCTCAGGAGAACGTGCTGTGGCCCAACCTGAC
AGTGAAGGAACACCTGGAGTTGTATGCTGCTGTGAAGGGGCTGAAGAAAAAGGATGCTGTGGTCACCATC
ACACGGTTGGTGAATGCCCTTAAACTGCAGGACCACTTGAAGGCTCTTGTCAGGACCTTGTCAGAGGGAG
TGAAGAGAAAGCTGTGTTTCGTGCTGAGCATCCTGGGGAACCCTCCTGTGGTACTTCTGGATGAGCCATC
GACTGGGATGGACCCCGAAGGGCAGCAGCAAATGTGGCAGGCGATCCGAGCCACTTTCACAAACACAGAG
CGGGGCGCCCTCCTGACCACCCATTACATGGCAGAAGCAGAGGCTGTGTGTGACCGTGTGGCCATCATGG
TGTCTGGGAGGCTGAGGTGCATTGGTTCTATCCAACATCTGAAGAGCAAATTCGGCAAAGATTACCTGCT
GGAGATGAAGGTGAAGACCCCCTCACAGGTGGAACCCCTGAACACGGAGATCATGAGACTGTTCCCCCAG
GCTGCTCGGCAGGAAAGGTACTCCTCTCTGATGGTCTATAAGTTGCCTGTTGAGGACGTACGACCTTTAT
CCGAGGCTTTCTTCAAATTGGAGAGATTGAAAGAGAATTTTGACCTGGAAGAATACAGCCTCTCACAGTC
TACTCTGGAGCAGGTCTTCCTGGAGCTCTCCAAGGAGCAGGAGCTGGACGACTTTGGCGAAGAAGCCAAT
TCCTCAGTGAAATGGAAGCTCCTCCCACAGGAAGAGCTGTAA

Translation (1623 aa):
MRKRHLRLGQQMWALLCKNWLRKFRMRRETLLEWLFSLLLILFVYQLSSNLHQVHDAPEMSVVDLGRVDN
FNDSNYMMVFAPESEATHEIMNKVASAPFMKGRTIVACPDEKSMNELDLNYSIDAVRVIFKDTFSYHLKF
SWGQRIPKTKEHKDHSAPCEPLNNKMICENSAFWEKGFVAFQAAINAGIIEMITNHSVMEELMSVIGSNM
KMPPFIAQGGVATDFFIFFCVISFSSLIYYLSVNITQERQYMTTLMAMMGLRESAFWLSWSLMYAGFILV
VAVLMSLIVKSAQVVVLTGFMVVFLLFLFYGLSLITLSFLMSVLIKKPFLTGLAIFILTVFWGSLGFTAL
YKHLPAFVEWTLCFLSPFAFTTGMAQLIHLDYDVNSNVNLNSPNNSYLIMATLFMLVLDALLYLVLALYF
DKITLSKYGHQRSPLFFLKSSYWFKRRGASHVVLENEIDSDPSLNDSLEPVSPEFQGKEAIRIKNLKKEY
SGKHGKVEALRGLGFDIYEGQITALLGHSGAGKTTLINTLSGLSPPTTGSVTIYNQTVSEMDDSDAVLTI
TGVCPQSNVQFGFLTVRENLRLFAKIKGILPHEVEQEVQQVLQDLEMENIQDILAQNLSGGQKRKLTLGI
AILGDPQVLLLDEPTAGLDPLSRHRIWNLLKERRAGRVIVFSTQFMDEADILADRKVFISNGRLKCAGSS
LFLKKKWGIGYHLSLHLNEACDPEGITSLVKKHISDARLTTQSEERLVYILPLERTNKFPDLYRDLDRCS
NQGIEDYGVSMTTLNEVFLKLEGKSMADESDVGICGRLQSDGARDMESLVELEQVLSLDSSGSSVSGMAL
WRQQLCAVAKVRFFKLKNERKSLMTVLLLFGISFVPQLLEHLVYKVYHKSYSWGLSPSMYFLSPGQPPQD
PLTHLLVINRTGSSIDNFVHALRQQGIALDLDALGTRNGTEEALYNGAITVLGEEKALRFSVACNAKRLN
CFPVLMDIISNGLLGIFNSSERIQTDRSTVFEEHMLYEYGFMSNAFFWIPVAASLTPYIAMGSISDHKKK
VLSQLWTSGLYPSAYWCGQALVDIPIYFLILFLMQIMDSVFSSEEFISVMESLLIQIPCSIGYASSLIFM
TYVISFIFRNGRKNSGIWSFFFLIVTIFFIIATDINEYGFLELLICTFLVPPFTLIGSLLIFSEVSYDSV
DYLGTSESQLVFLALLIPYLHFLLFFFILRCLERYLRKKSLRVDPVFRISPRSCPAVPNPEEPGEEDEDV
QMERVRTTGAMATLQTDEKPVIIASCLRKEYIGRTKRCFSKMKKKIATRNISFCVKKGEVLGLLGHNGAG
KSTTISMITGDTIPTAGQVFLKGSGGGAALGFLGYCPQENVLWPNLTVKEHLELYAAVKGLKKKDAVVTI
TRLVNALKLQDHLKALVRTLSEGVKRKLCFVLSILGNPPVVLLDEPSTGMDPEGQQQMWQAIRATFTNTE
RGALLTTHYMAEAEAVCDRVAIMVSGRLRCIGSIQHLKSKFGKDYLLEMKVKTPSQVEPLNTEIMRLFPQ
AARQERYSSLMVYKLPVEDVRPLSEAFFKLERLKENFDLEEYSLSQSTLEQVFLELSKEQELDDFGEEAN
SSVKWKLLPQEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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