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Report for CCDS56837.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
56837.1 |
Reviewed, update pending |
Mus musculus |
12 |
Snx13 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:217463](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:56837.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 12 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)
Attributes |
CDS uses downstream AUG |
Sequence IDs included in CCDS 56837.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000048519.16 |
ENSMUSP00000038430.9 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000048519.16](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000038430.9](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000048519](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000038430](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_001014973.2 |
NP_001014973.2 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_001014973.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001014973.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001014973](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001014973](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001014973.3 |
NP_001014973.3 |
Pending |
alive |
![Link to Nucleotide Sequence:NM_001014973.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001014973.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001014973](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001014973](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001014973.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001014973.3 |
957 |
Q6PHS6 |
957 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 56837.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2877 nt): ATGATGTTAACAGAGGCCAGTCTATCCATATGGGGATGGGGAAGCCTTGGCATTGTCCTTTTTCTAATAA CCTTTGGACCCTTTGTAATATTTTATTTGGCATTTTATATCCTCTGCTTTGTGGGAGGGGGTTTAGTGGT TACTCTTCTGTATGGGAAAACTAACTCAGAAAAATACCTAGAACAGTGTGAACACTCATTTCTTCCTCCA ACATCATCTGGGGTTCCTAAGTGCTTAGAAGAAATGAAACGCGAAGCCAGGACTATAAAGATTGACAGAA GATTGACGGGTGCCAATATAATTGATGAGCCTCTCCAGCAAGTTATCCAGTTTTCCTTGAGGGATTATGT CCAGTACTGGTATTATACATTAAGTGATGATGAGTCATTTCTTCTTGAAATTAGGCAAACTCTTCAAAAT GCGCTCATTCAGTTTGCTACTAGGTCAAAAGAAATAGACTGGCAGCCTTATTTTACTACACGCATTGTAG ATGATTTTGGCACTCACCTACGAGTATTCAGAAAGGCCCAACAGAGAGTAACAGAGAAAGACGATCAAGT AAAAGGTACAGCAGAGGATCTGGTAGAAACCTTTTTTGAAGTTGAAGTTGAAATGGAGAAGGATGTTTGC CGGGATCTAGTGTGCACTTCTCCCAAAGATGAAGAAGGATTCCTAAGGGATTTGTGTGAGGTTTTATTAT ATTTATTGCTACCTCCTGGAGATTTCCAGAGCAAGATCATGCGATACTTTGTCAGGGAAATCCTTGCACG AGGAATTCTTCTTCCATTAATAAATCAACTCAGTGATCCTGATTATATTAATCAATATGTCATATGGATG ATCCGTGATTCAAATTGCAACTATGAGGCCTTTATGAACATTATTAAATTAAGTGACAATATTGGAGAGT TAGAGGCAGTCAGAGATAAGGCAGCAGAAGAGCTACAGTATCTTAGATCCTTAGATACAGCCGGTGATGA TATCAACACTATCAAAAATCAAATAAATAGCTTATTATTTGTAAAGAAAGTATGTGATTCAAGAATACAG CGGTTACAGTCAGGCAAAGAAATAAATACTGTGAAGCTAGCAGCAAACTTTGGGAAACTTTGTACAGTCC CCTTGGACAGCATTCTTGTAGACAATGTTGCACTACAATTTTTTATGGATTATATGCAGCAAACTGGAGG CCAAGCACATCTCTTCTTCTGGATGACAGTGGAAGGGTACCGGGTTACAGCCCAGCAACAGCTCGAGGTT CTCTCAGGTCGCCAGAGAGATGGCAAACAGCAGACCAACCAAACCAAAGGTCTTTTAAGAGCAGCAGCTG TTGGAATTTATGAGCAGTATTTATCTGAAAAGGCATCTCCAAGAGTTACTGTTGATGACTATTTAGTGGC AAAACTAGCAGATACTTTGAATCATGAAGACCCAACTCCAGAAATCTTTGATGACATTCAAAGAAAGGTA TATGAACTGATGCTACGAGATGAAAGATTTTATCCTTCCTTTAGGCAGAATGCGCTCTATGTGCGAATGC TAGCTGAGCTTGACATGTTAAAAGATCCTAGTTTCAGAGGATCAGATGATGGGGATGGAGAATCTTTTAA TGGGTCTCCTACAGGAAGCATAAATTTGTCTTTAGATGACCTTTCAAGTGTGACTTCTGATGATTCTGTA CAACTTCATGCCTACATTTCAGACACTGGCGTTTGTAATGATCATGGCAAGACATATGCACTATATGCCA TCACTGTACACCGGCGCAACCTAAACACTGAGGAGATGTGGAAAACCTATCGGCGTTATAGTGACTTCCA TGACTTCCACATGAGAATCACTGAGCAGTTTGAAAATCTGTCAAGCATATTGAAGCTTCCTGGTAAAAAG ACGTTTAACAATATGGATAGAGATTTTTTAGAAAAGAGGAAAAAGGATTTAAATGCCTACTTGCAGTTAC TCTTGACTCCTGAAATGATGAAGGCATCCCCGGCGCTGGCTCACTGTGTCTATGATTTCCTTGAGAACAA AGCCTACAGTAAAGGGAAGGGTGATTTTGCTCGAAAGATGGACACTTTCGTAAATCCGCTTCGCAACTCT ATGAGGAATGTTTCAAATGCAGTCAAATCCCTTCCTGATAGCTTGGCAGAAGGAGTGACAAAAATGTCGG ACAACGTGGGCAGAATGTCAGAGAGATTAGGGCAAGACATAAAGCAGTCATTTTTTAAGGTCCCTCCTTT AATTACGAAGACTGATTCAGATCCTGAACATTGTCGAGTCTCAGCTCAGCTTGATGATAATGTGGATGAC AATATTCCACTTAGGGTAATGCTGCTTCTAATGGATGAGGTGTTTGACTTAAAAGAGAGAAACCAGTGGT TGAGAAGGAATATCAAGAATTTACTCCAGCAGCTTATTAGAGCTACATATGGTGATACTATTAACAGAAA AATAGTTGACCATGTTGACTGGATGACCTCACCGGAACAAGTAGCTGACTCGGTGAAGCGTTTCAGAGAT GCATTTTGGCCCAATGGCATTTTAGCAGAGACTGTCCCATGCAGAGATAAAGCTATTCGAATGAGAACAA GAATTGCAGGAAAAACAAAATTATTTGCAATTATGCCAGATGAACTGAAGCACATTATTGGAGCGGAGAC AACACGGAAAGGTATTCTTCGCGTGTTTGAAATGTTTCAGCACAACCAGCTAAATAGGAGAATGGTGTAT GTCTTCTTAGAAGGCTTTTTAGAAACCTTATTTCCACAGTATAAATTTCGTGAACTTTTCAACAAACTTC ATTCAAGGTCAAAGCAAATGCAGAAATATAAACAAAAACTTCAAAGTACTCAAGCGCCTTCTTTACAAAA AAGGTGA
Translation (958 aa): MMLTEASLSIWGWGSLGIVLFLITFGPFVIFYLAFYILCFVGGGLVVTLLYGKTNSEKYLEQCEHSFLPP TSSGVPKCLEEMKREARTIKIDRRLTGANIIDEPLQQVIQFSLRDYVQYWYYTLSDDESFLLEIRQTLQN ALIQFATRSKEIDWQPYFTTRIVDDFGTHLRVFRKAQQRVTEKDDQVKGTAEDLVETFFEVEVEMEKDVC RDLVCTSPKDEEGFLRDLCEVLLYLLLPPGDFQSKIMRYFVREILARGILLPLINQLSDPDYINQYVIWM IRDSNCNYEAFMNIIKLSDNIGELEAVRDKAAEELQYLRSLDTAGDDINTIKNQINSLLFVKKVCDSRIQ RLQSGKEINTVKLAANFGKLCTVPLDSILVDNVALQFFMDYMQQTGGQAHLFFWMTVEGYRVTAQQQLEV LSGRQRDGKQQTNQTKGLLRAAAVGIYEQYLSEKASPRVTVDDYLVAKLADTLNHEDPTPEIFDDIQRKV YELMLRDERFYPSFRQNALYVRMLAELDMLKDPSFRGSDDGDGESFNGSPTGSINLSLDDLSSVTSDDSV QLHAYISDTGVCNDHGKTYALYAITVHRRNLNTEEMWKTYRRYSDFHDFHMRITEQFENLSSILKLPGKK TFNNMDRDFLEKRKKDLNAYLQLLLTPEMMKASPALAHCVYDFLENKAYSKGKGDFARKMDTFVNPLRNS MRNVSNAVKSLPDSLAEGVTKMSDNVGRMSERLGQDIKQSFFKVPPLITKTDSDPEHCRVSAQLDDNVDD NIPLRVMLLLMDEVFDLKERNQWLRRNIKNLLQQLIRATYGDTINRKIVDHVDWMTSPEQVADSVKRFRD AFWPNGILAETVPCRDKAIRMRTRIAGKTKLFAIMPDELKHIIGAETTRKGILRVFEMFQHNQLNRRMVY VFLEGFLETLFPQYKFRELFNKLHSRSKQMQKYKQKLQSTQAPSLQKR
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