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Report for CCDS26028.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26028.1 Public Mus musculus 12 Zfyve1 23 108 98 CCDS HistoryNCBI Gene:217695Re-query CCDS DB by CCDS ID:26028.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26028.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048319.5 ENSMUSP00000042224.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048319.5Link to Ensembl Protein Viewer:ENSMUSP00000042224.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000048319Re-query CCDS DB by Protein ID:ENSMUSP00000042224
Original member Current member EBI ENSMUST00000221919.1 ENSMUSP00000152501.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000221919.1Link to Ensembl Protein Viewer:ENSMUSP00000152501.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000221919Re-query CCDS DB by Protein ID:ENSMUSP00000152501
Original member Current member NCBI NM_001359166.1 NP_001346095.1 Accepted alive Link to Nucleotide Sequence:NM_001359166.1Link to Protein Sequence:NP_001346095.1Re-query CCDS DB by Nucleotide ID:NM_001359166Re-query CCDS DB by Protein ID:NP_001346095Link to BLAST:NP_001346095.1
Original member Current member NCBI NM_001359167.1 NP_001346096.1 Accepted alive Link to Nucleotide Sequence:NM_001359167.1Link to Protein Sequence:NP_001346096.1Re-query CCDS DB by Nucleotide ID:NM_001359167Re-query CCDS DB by Protein ID:NP_001346096Link to BLAST:NP_001346096.1
Original member Current member NCBI NM_183154.4 NP_898977.2 Accepted alive Link to Nucleotide Sequence:NM_183154.4Link to Protein Sequence:NP_898977.2Re-query CCDS DB by Nucleotide ID:NM_183154Re-query CCDS DB by Protein ID:NP_898977Link to BLAST:NP_898977.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346095.1 777 Q810J8 777 100% 0 0
NP_001346096.1 777 Q810J8 777 100% 0 0
NP_898977.2 777 Q810J8 777 100% 0 0

Chromosomal Locations for CCDS 26028.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 83547883 83548115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83550821 83550934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83551466 83551646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83552376 83552546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83554943 83555060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83555165 83555262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83555601 83555709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83558614 83558720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83568849 83569063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83574632 83575136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 83594398 83594880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2334 nt):
ATGAGTGCCCAGACTTCCCTAGCAGAGAAGGGCCTAAATCCGGGGCTCATGTGCCAGGAGAGTTATGCAT
GCAGTGGGACTGATGAAGCTATCTTTGAATGTGATGAGTGTTGTAGTTTGCAGTGTCTCCGCTGTGAGGA
GGAACTCCACAGACAGGAGCGCCTTCGAAACCATGAGCGGATAAGACTCAAAGCTGGCCATGTCCCTTAT
TGTGACCCCTGCAAGGGCCCCAATGGGCATTCGCCAGGTGTTAGGCAAAGGGCAGCCGTGAGGTGCCAGA
CTTGCAAAATCAATCTCTGCCTGGAATGCCAGAAGAGGACTCATTCAGGGGGTAACAAGAGAAGACACCC
CATTACCGTGTACCTTGTCAGTAAGGTCCAGGAGTCCCTGGAGGGGGAAGAGATGGATGAGGAGACCAAG
AGGAAGAAGATGACAGAGAGGGTTGTGAGCTTCCTCCTGGTAGACGAAAATGAAGAGATCCAGGTAACAA
ATGAAGAGGACTTTATCAGGAAATTGGACTGTAAGCCTGACCAGCATCTCAAGGTGGTTTCCATTTTTGG
AAATACTGGTGATGGAAAGTCTCACACACTCAACCACACTTTCTTCTATGGCCGAGAAGTCTTCAAAACC
TCCCCTGCTCAGGAGTCCTGCACAGTGGGAGTGTGGGCAGCCTATGACCCAGTCCATAAGGTAGCAGTGA
TAGACACAGAAGGACTCTTGGGGGCCACCGTGAATCTGAGCCAGAGGACACGGCTGCTGCTGAAGGTCCT
GGCCATCTCAGACTTGGTCATCTATCGAACTCATGCAGACCGGCTGCATAATGACCTCTTCAAATTCCTT
GGGGATGCCTCGGAAGCTTACCTGAAGCACTTCACCAAGGAACTCAAGGCCACCACTGCACGATGTGGCC
TGGATGTCCCCTTATCCACCCTGGGCCCTGCAGTTATTATTTTCCATGAGACTGTGCACACTCAGCTTCT
GGGTTCTGATCACCCCTCCGAGGCGCCCGAGAAGCTCATCCAGGACCGCTTCAGGAAGCTGGGCCGCTTC
CCCGAAGCCTTTAGCTCCATTCACTACAAGGGAACGAGGACATACAATCCGCCCACAGACTTCTCTGGGC
TTCGGCGTGCTCTGGAACAGCTACTAGAGAACAACACCACCAGGTCTCCCCGGCACCCAGGGGTCATCTT
CAAAGCCCTGAAGGCACTAAGTGACCGCTTCAGCGGTGAGATCCCCGATGACCAGATGGCGCACAGTTCA
TTTTTTCCAGACGAGTACTTCACCTGCTCCTCGCTCTGCCTCAGCTGTGGGGCGGGATGTAAGAACAGCA
TGAACCACGGCAAGGAAGGGGTGCCTCATGAAGCCAAGAGTCGCTGTAGGTACTCACACCAGTATGACAA
CCGCGTCTATACCTGCAAGGCCTGCTATGAGAGAGGCAAGGAAGTCAGCGTGGTGCCCAAAACATCTGCC
TCCACTGACTCTCCCTGGATGGGGCTGGCAAAGTATGCCTGGTCTGGGTATGTGATCGAGTGTCCTAACT
GTGGGGTGGTCTATCGGAGCCGCCAGTACTGGTTTGGGAACCAAGATCCTGTGGATACGGTGGTGCGGAC
AGAGATTGTCCACGTGTGGCCTGGAACTGATGCATTTCTGAAGGATAACAACAATGCCGCCCAGCGTCTC
TTGGATGGAATGAACTTTATGGCTCAGTCAGTGTCTGAGCTCAGCCTCGGACCCACTAAGGCTGTGACGT
CTTGGCTAACGGATCAGATTGCCCCTGCCTACTGGAGGCCCAACTCCCAGATCCTGAGCTGCAACCAGTG
TGCGACATCCTTCAAGGACAACGACACGAAGCATCACTGCCGGGCCTGTGGGGAGGGCTTCTGTGACAGC
TGTTCATCCAAGACCCGGCCGGTGCCTGAGCGGGGCTGGGGACCTGCGCCTGTCCGCGTGTGTGACAGCT
GCTACGATGCCAGGAATGTCCAGTTAGATGTGACTGAGGCGCAGGCAGATGATGAAGGTGGAACGCTGAT
TGCCCGGAAGGTGGGCGAGGCCGTGCAGAACACCTTGGGAGCCGTGGTGACAGCTATTGACATACCACTA
GGCCTGGTAAAAGATGCCGCCAGGCCGGCCTACTGGGTGCCTGACCATGAGATCCTGCACTGCCACAACT
GCCGCAAGGAGTTCAGCGTCAAGCTCTCCAAACACCACTGCCGAGCTTGCGGACAGGGCTTCTGCGATGA
GTGCTCCCATGACTGCAGGGCTGTCCCCTCTCGTGGCTGGGACCATCCAGTCCGAGTCTGCTTCAACTGC
AATAAAAAGCCCGGTGACCTTTAA

Translation (777 aa):
MSAQTSLAEKGLNPGLMCQESYACSGTDEAIFECDECCSLQCLRCEEELHRQERLRNHERIRLKAGHVPY
CDPCKGPNGHSPGVRQRAAVRCQTCKINLCLECQKRTHSGGNKRRHPITVYLVSKVQESLEGEEMDEETK
RKKMTERVVSFLLVDENEEIQVTNEEDFIRKLDCKPDQHLKVVSIFGNTGDGKSHTLNHTFFYGREVFKT
SPAQESCTVGVWAAYDPVHKVAVIDTEGLLGATVNLSQRTRLLLKVLAISDLVIYRTHADRLHNDLFKFL
GDASEAYLKHFTKELKATTARCGLDVPLSTLGPAVIIFHETVHTQLLGSDHPSEAPEKLIQDRFRKLGRF
PEAFSSIHYKGTRTYNPPTDFSGLRRALEQLLENNTTRSPRHPGVIFKALKALSDRFSGEIPDDQMAHSS
FFPDEYFTCSSLCLSCGAGCKNSMNHGKEGVPHEAKSRCRYSHQYDNRVYTCKACYERGKEVSVVPKTSA
STDSPWMGLAKYAWSGYVIECPNCGVVYRSRQYWFGNQDPVDTVVRTEIVHVWPGTDAFLKDNNNAAQRL
LDGMNFMAQSVSELSLGPTKAVTSWLTDQIAPAYWRPNSQILSCNQCATSFKDNDTKHHCRACGEGFCDS
CSSKTRPVPERGWGPAPVRVCDSCYDARNVQLDVTEAQADDEGGTLIARKVGEAVQNTLGAVVTAIDIPL
GLVKDAARPAYWVPDHEILHCHNCRKEFSVKLSKHHCRACGQGFCDECSHDCRAVPSRGWDHPVRVCFNC
NKKPGDL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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