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Report for CCDS56867.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56867.1 Public Mus musculus 12 Cep170b 23 108 98 CCDS HistoryNCBI Gene:217882Re-query CCDS DB by CCDS ID:56867.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56867.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101018.10 ENSMUSP00000098580.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101018.10Link to Ensembl Protein Viewer:ENSMUSP00000098580.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000101018Re-query CCDS DB by Protein ID:ENSMUSP00000098580
Original member Current member EBI ENSMUST00000222711.1 ENSMUSP00000152451.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000222711.1Link to Ensembl Protein Viewer:ENSMUSP00000152451.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000222711Re-query CCDS DB by Protein ID:ENSMUSP00000152451
Original member NCBI NM_001024602.3 NP_001019773.2 Updated not alive Link to Nucleotide Sequence:NM_001024602.3Link to Protein Sequence:NP_001019773.2Re-query CCDS DB by Nucleotide ID:NM_001024602Re-query CCDS DB by Protein ID:NP_001019773
Current member NCBI NM_001024602.4 NP_001019773.2 Accepted alive Link to Nucleotide Sequence:NM_001024602.4Link to Protein Sequence:NP_001019773.2Re-query CCDS DB by Nucleotide ID:NM_001024602Re-query CCDS DB by Protein ID:NP_001019773Link to BLAST:NP_001019773.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019773.2 1574 Q80U49-1 1574 100% 0 0

Chromosomal Locations for CCDS 56867.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 112724651 112724755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112731351 112731440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112732005 112732083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112732500 112732558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112733392 112733530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112735161 112735265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112735352 112735825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112736156 112736868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112737158 112737331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112737574 112737664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112737839 112739509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112740774 112741011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112742953 112743112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112743403 112743546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112743670 112743758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112744070 112744163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112744523 112744574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112744665 112744912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4725 nt):
ATGAGCGTCACATCTTGGTTCCTGGTGAGCAGCAGTGGCACCCGCCACCGGCTCCCGCGTGAACTCATCT
TCGTGGGGCGTGATGAATGTGAGCTCATGTTGCAGTCCCGTAGTGTGGACAAGCAGCATGCCGTCATCAA
CTACGACCAGGACCGTGATGAGCACTGGGTGAAGGACCTGGGCAGTCTCAATGGGACATTTGTGAATGAT
GTGCGCATCCCAGACCAGAAGTACATCACACTGAAGCTCAATGACGTCATCCGCTTTGGCTATGATTCCA
ACATGTACGTGTTAGAGCGTGTGCAGCACCGTGTTCCCGAGGAGGCGCTCAAGCACGAGAAGTACACCAG
CCAGCTGCAGGTGAGCGTCAAGGTCTCTGCGCCCAAGAGGGGTGATGCACTGCCCGACCACACACCCTAC
TGCGAGTCCTCACAGCCTAGACCAGAGAAAGGTGACCGAAGACATGGAGCAGAGGCGGTCGCTTACCGCA
CACCCCTGTATGGGCAGCCCTCCTGGTGGGGTGAGGATGACAGTGGGGCACCATCTGAAGACCGGCACCA
GGAGGAGCCCTACTCAGAGCGTCCCAAGGACCTGGCACAGCAAAATGGTGAGCTGGACAGCTGCCGTGCT
CCCGCCGAGCCACCAGACTACTCGTTCAGACGTGAGCCCAGCTACTTTGAGATCCCCACGAAGGAAACCC
CGCAGCCTCCAAGGCTCCCTGAGGTGCCTACCCAGGAAGTGCCCACAAAAGACCAGGAGGCAGGTGTTGG
TGGGACGGCCCCTGTGGTGCAGAGCCACGCCTCCTTCACCATTGAGTTTGATGACTGCAGTCCAGGCAAG
GTGAAAATCAAAGACCATATCACCAAGTTCTCCCTGCGCCAGCGGCGGGCTCCCAGCAAGGAGACCACCC
CTGTGGAGACGGTCTCGGCCGAAACCAAGGTGGCCGACTGGCTGGTGCAGAACGACCCAAGCCTGCTGCG
CCGGGATGGCCCCGGGGATGACCGCCACAGCACCAAAAGCGACCTTCCTGTCCACACTCGAACTCTGAAG
GGCCACAAGCATGAGGATGGCACACAGAGCGACTCGGAGGACCCCTTGGCCAAGACTGCTTCGGTGTCTG
GAGCCTCAGCGGAGGCCAGTGGGGAGCAGGTGCGGCTGCAGAGGCAGATCAAAAGGGACCCTCAAGAGCT
GCTGCACAACCAGCAAGCCTTTGTCATCGAGTTCTTCGATGGGGACACACCCCGTAAGAAACGCTCCCAG
TCCTTTACACACACCCCGCCTGCAGACCCCAAGGCTGACAAGCGTCGGGGTCCTGGGACTTCAGACAGAG
ACCGTCCTGGTGTCTCGGTCCGTGCCACTGGCAGCAGCTCAGGACCACAGAGGGCCAGCTCGCTCAAGCG
AGAGAAGACTGAGGAGCGACTGGGCAATACTTCTCCCGTCCCCCGCGCCTCCACCCGCTCCTTTGGCAGT
GTGGGGCGCCGCTCCCGCCTGGCCCAGGACTTCATGGCCCAGTGCATGCGGGACAGTTCCCCAGCCACAA
GACCTGCCCCCGAGAAGACACCTCCAGTGCTGCCCGCCCCTTTGACACCCCGAGGAGCCAGCCCTGTGAC
CCCCTCAACCACCCCACCGCCTCCCACTGACCCTCAGCTGACCAAGGCACGTAAACAGGAGGAGGATGAC
AGTCTTAGCGACGCAGGCACGTACACCATTGAGACAGAGGCTCAAGACCAAGAAGTGGAGGAGGCTCGGA
GGATGATCGACCAGGTTTTTGGAGTGTTTGAATCCCCTGAACTCTCCAGGGTGTCCTCTGCTACCTTCCG
CCCTGTCATCAGAGGTGACAAAGATGAGTCCAGTGATGGGGGCATGGCCCAGCGGATGGCTTTGCTGCAA
GAGTTTGCCTCCCGAGCACCAGGCATGGCTCCCCAGATGGAGCAGCAGAGCCTCTTGGTCCCAGGTTCTC
CTGGGGGTCAGAAGTGGGTTTCCCGATGGGCTAGCCTGGCTGACAGCTACTCAGATGCTGGTTTGCCAGA
GGACGGTCCTGGGCGCAGAACCGGAGAGCCTGAGGGGCCCCTGCCTGTGCGAACTCGGCGTCTGCTCCCT
CAGTTGCCCAGTGGTAGGGCTGACAGCCCCGCAGGCCTTGAAGCTGCCAGGCGGAATGGCCCAGGGCCAC
CAGAGCTGGGCAGTGAGCCAGCAAACTGCCTCATAGGCCAGGAAGACCTGGACCCTGATAGTCTCAGTGA
TGCCAGTGGGTCAGATGGCGGCCGAGGCCCAGAACCAGGCACAGAGCGGCAGGAGGATCTAGCATGGGTC
AGGGGTCGGCGCTCACCACGGGCCCCTGGGGAGCTAGTCCCCACCTCTTTCTTCATTGGTGATCAGAATG
GGGAGGCCACCTTCCCCAAGAAATCATTTGTGGGTCCTGGGGAAGTGGATGGCCCAGGACGGGTAGTCCA
GACCAGCCCTTCAGCAAGGGATGGCCTTTACGTCAGTTCCAATGGGAGGATGGTGATCCAGTTGCGCAGT
GGTCGGTCCCCAGAGCCTGACCCAGCTCCACCCAAGGAGACTCTGACCTTTGCCCGGCAAGAGAGTTTCA
CTAAGGAGCCAACCAGCGGCCCCCCAGCACCTGGCAAGCTCCCCCACATTTCTAGCCACCCGCTCCTACA
AGACTTGGCTGCAGCCCGTGCCTCACGCCTGGACTTCCACGCTCAGGACACCCACCTGATCTTGAAGGAG
ACTGAGACAGCCCTGGCAGCCCTGGAAGCTCGACTCCGCTCCAAGTCTGCAGACGAGTGTGATGGGGGTA
GCACCCCCAGGCCTCCAGAGGACTCGCTGTCTGGGGATTCAGATGTGGACACAGCCAGCACCATTAGCTT
GCTCAGCGGCAAAAATGGTCCCAGCCCAACAACACCCCAGACTCCAGGACCACAGAAGGAGAGCCCATTG
TCTCCACCAACAGTACCAGACCCAGGGGGTGCTACCCCGGGCAGCGCCCGAGAGCGGATGTCTGAGAGAC
AGCATCGCCCAACACCTGCAGACTTGGGCCCTGGAGACACATCAAGGCGCGCAGCCATGCGGCGAGGTCA
TGGGTCTCGAGGGTCCCTGGACTGGCCCGAGGAAGAGCGAGGTTCTGGCCTTGCCCACTTGCCCAGTTCT
AACCACGAGACCCCAGAGGCTACCCTGGCAGGCCGACAAGGACCTCGTCGGAAACCAGCGGCTCCCCCAC
CATCCCCAGCCGCACGGGAGGAGCAAAGCCGCAGCTCCGCCACCGCTCAGAAGGTGCAGCAGGCACTGAC
CCGCTCTAACAGCCTGTCCACCCCAAGGCCCACCAGGGCCTCCCGACTCAGGCGGGCCCGTCTAGGGGAT
GCCTCAGACACTGAGGCTGTGGATGGTGAACGAGGGACCGCAGCCAACCCTGAACCAGCAAATCGTGCTG
CCCCTGAGCAGGCCAAGAAACTGACACGCTTGGACATCCTGGCCATGCCCCGGAAGCGGGCAGGCTCCTT
CACAGGGCCCAGTGATTCTGAGACTGCCCCTGCCCGTACTGGCTTCTCCGGTCGCAGTGCTGAGCTCTAC
AGCACCAGCCGTAAGCCCACGATAGCTGAGGCCCGTGCTGCTGCCAAGAAGGCTGCTGCTACTGCAGCCA
ACACTGGCCCCCGCCAGCCCTTCAGCAGGGCTCGCCCGGGCAGTGCCAGATATTCTTCCAACACGAGGCG
TCGGCAGCAGGGTTCGGATTACACGTCCACCTCCGAGGAGGAGTATGGGTCCCACCACAGCTCCCCTAAA
CACACACGCTCCCATGCCTCAACAGCCACACAGACCCCAAGGGGCAGCAGCTCTACCCGGGCTCGCTCCC
AGGGCCCCCGAGACACAGATGATGACGAGGAAGAGCCTGACCCCTACGGCTTCATCGTGCAGACAGCAGA
GATCGCAGAGATTGCTAGGCTAAGCCAGACACTAGTGAAGGATGTGGCCATCCTGGCCAGGGAGATCCAT
GATGTGGCTGGAGACGGGGACTCACTGGGCTCCCCAGGCCCCACTCGCAGCCCATCTCTCGGGAATGTGC
CCAACACCCCTGCCTCAACCATCTCAGCCCGGGAAGAGCTGGTACAGCGTATACCAGAGGCCAGCCTGAA
CTTCCAGAAAGTGCCGCCTGGCTCTATGAACTCTCACAACTTGGACCAGAACATGAATGACAGCCGAGAC
GATGCTCTGACCAACAAGACGAGGCCTCGGAACCGTGAGGAGGTGATCTTTGATAATCTGATGCTAAACC
CGGTGTCCCAGCTGTCACATGCCATTCGTGAAAACACGGAGCATCTTGCTGAGAAGATGAAGGTCCTCTT
CCAGAATACAGGCCGGGCCTGGGAGGACTTAGAGGCCAGAATCAACTCTGAGAATGAAGTACCCATCCTG
AAGACATCCAACAAGGAAATCAGCTCCATCCTGAAGGAACTTCGACGCGTACAGAAGCAGTTAGAAGTCA
TCAATGCCATCGTGGACCCCAGCTTGAACCTCGACCTACTGATGGGAAACAGGGCTCCTTCAGGGTCTGG
CCAGCCAGGACTTGGGAAAGCCCGGCCAGCAGCTCAGAGCTCAACTTCACCTGCCTCGGTGGATACCTTG
CTGCCAGCCCTGCCTCTCAGGAGCTTCCCACAGCGGGCCAACTGCGGGCCCCCCGGCCTCCCGGAGCCTG
CCTTCCTTCCTGATGCTGAGAGGTTTCTGATCTAA

Translation (1574 aa):
MSVTSWFLVSSSGTRHRLPRELIFVGRDECELMLQSRSVDKQHAVINYDQDRDEHWVKDLGSLNGTFVND
VRIPDQKYITLKLNDVIRFGYDSNMYVLERVQHRVPEEALKHEKYTSQLQVSVKVSAPKRGDALPDHTPY
CESSQPRPEKGDRRHGAEAVAYRTPLYGQPSWWGEDDSGAPSEDRHQEEPYSERPKDLAQQNGELDSCRA
PAEPPDYSFRREPSYFEIPTKETPQPPRLPEVPTQEVPTKDQEAGVGGTAPVVQSHASFTIEFDDCSPGK
VKIKDHITKFSLRQRRAPSKETTPVETVSAETKVADWLVQNDPSLLRRDGPGDDRHSTKSDLPVHTRTLK
GHKHEDGTQSDSEDPLAKTASVSGASAEASGEQVRLQRQIKRDPQELLHNQQAFVIEFFDGDTPRKKRSQ
SFTHTPPADPKADKRRGPGTSDRDRPGVSVRATGSSSGPQRASSLKREKTEERLGNTSPVPRASTRSFGS
VGRRSRLAQDFMAQCMRDSSPATRPAPEKTPPVLPAPLTPRGASPVTPSTTPPPPTDPQLTKARKQEEDD
SLSDAGTYTIETEAQDQEVEEARRMIDQVFGVFESPELSRVSSATFRPVIRGDKDESSDGGMAQRMALLQ
EFASRAPGMAPQMEQQSLLVPGSPGGQKWVSRWASLADSYSDAGLPEDGPGRRTGEPEGPLPVRTRRLLP
QLPSGRADSPAGLEAARRNGPGPPELGSEPANCLIGQEDLDPDSLSDASGSDGGRGPEPGTERQEDLAWV
RGRRSPRAPGELVPTSFFIGDQNGEATFPKKSFVGPGEVDGPGRVVQTSPSARDGLYVSSNGRMVIQLRS
GRSPEPDPAPPKETLTFARQESFTKEPTSGPPAPGKLPHISSHPLLQDLAAARASRLDFHAQDTHLILKE
TETALAALEARLRSKSADECDGGSTPRPPEDSLSGDSDVDTASTISLLSGKNGPSPTTPQTPGPQKESPL
SPPTVPDPGGATPGSARERMSERQHRPTPADLGPGDTSRRAAMRRGHGSRGSLDWPEEERGSGLAHLPSS
NHETPEATLAGRQGPRRKPAAPPPSPAAREEQSRSSATAQKVQQALTRSNSLSTPRPTRASRLRRARLGD
ASDTEAVDGERGTAANPEPANRAAPEQAKKLTRLDILAMPRKRAGSFTGPSDSETAPARTGFSGRSAELY
STSRKPTIAEARAAAKKAAATAANTGPRQPFSRARPGSARYSSNTRRRQQGSDYTSTSEEEYGSHHSSPK
HTRSHASTATQTPRGSSSTRARSQGPRDTDDDEEEPDPYGFIVQTAEIAEIARLSQTLVKDVAILAREIH
DVAGDGDSLGSPGPTRSPSLGNVPNTPASTISAREELVQRIPEASLNFQKVPPGSMNSHNLDQNMNDSRD
DALTNKTRPRNREEVIFDNLMLNPVSQLSHAIRENTEHLAEKMKVLFQNTGRAWEDLEARINSENEVPIL
KTSNKEISSILKELRRVQKQLEVINAIVDPSLNLDLLMGNRAPSGSGQPGLGKARPAAQSSTSPASVDTL
LPALPLRSFPQRANCGPPGLPEPAFLPDAERFLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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