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Report for CCDS26908.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26908.1 Public Mus musculus 14 Sema3g 23 108 98 CCDS HistoryNCBI Gene:218877Re-query CCDS DB by CCDS ID:26908.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26908.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090180.3 ENSMUSP00000087643.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090180.3Link to Ensembl Protein Viewer:ENSMUSP00000087643.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000090180Re-query CCDS DB by Protein ID:ENSMUSP00000087643
Original member Current member NCBI NM_001025379.1 NP_001020550.1 Accepted alive Link to Nucleotide Sequence:NM_001025379.1Link to Protein Sequence:NP_001020550.1Re-query CCDS DB by Nucleotide ID:NM_001025379Re-query CCDS DB by Protein ID:NP_001020550Link to BLAST:NP_001020550.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020550.1 780 Q4LFA9 780 100% 0 0

Chromosomal Locations for CCDS 26908.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 31217911 31218025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31220559 31220719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31220830 31220892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31221121 31221240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31221521 31221611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31221715 31221831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31221994 31222139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31222336 31222450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31222559 31222628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31222920 31223064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31223289 31223520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31223610 31223701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31224620 31224661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31225919 31226153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31226386 31226519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31227742 31228206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2343 nt):
ATGGACCCATCTGCGTGGGCCATCTGCTGCCTCCTGGGGAGCCTTCTGTTCCATGTGGGCATCCCCAGCC
CTGGTCCCAGCCCCAGTGTGCCTCGTCTGCGGCTCTCCTACAGAGATCTCCTGTCTACCAACCGCTCTGC
CATCTTTCTGGGCCCACGGGGTTCCCTAGACCTCCAAGTCATGTACCTGGATGAGTATCGAGATCGCCTC
TTTCTGGGAAGCCGAGATGCCCTTTACTCTCTGAGACTGGATCAGGCATGGCCAGACCCCCGGGAGGTCT
TGTGGCTGCCACAGCCAGGACAGAAGGTGGAATGTGTCCGCAAGGGAAAAGACCCTTTGACGGAGTGTGC
CAACTTCGTGCGGGTCTTACAACCCCATAACCGGACCCATCTGCTGGCCTGTGGCACAGGAGCCTTCCAA
CCCATCTGCACCTTCATCACAGTGGGGCATCGAGGGGAGCATGTGCTCCGCTTGGATGCTAGCAGCGTCG
AGAATGGAAGGGGGCGTTGCCCACATGAGCCCAGCCGACCCTTCGCCAGCACCTTTGTAGGTGGGGAGCT
ATACACAGGTCTCACTGCCGATTTCCTGGGACGTGAGGCCATGATTTTCCGGAGTGGGGGTCCCCGACCA
GCCCTGCGTTCTGACTCTGACCAGAGCCTCCTACATGAACCCCGGTTTGTGATGGCTGCTCGGATCCCAG
ATAACTCTGACCGGGACGACGACAAGGTGTACTTCTTCTTCTCCGAGACTGTCCCGTCACCAGATGGTGG
CCCAGGTCATGTCACCATCAGCCGAGTGGGCCGCGTCTGTGTGAATGATGCTGGTGGCCAGCGGGTGCTG
GTGAACAAATGGAGCACTTTCCTCAAGGCCCGGCTGGTGTGCTCTGTGCCTGGCCCGGGTGGGGCTGAGA
CTCACTTTGACCAGCTAGAGGATGTGTTCCTGCTGTGGCCCAAGGCCGGGAAGAGCCTCGAGGTGTATGC
GCTGTTCAGCACTGTCAGTGCTGTGTTCCAGGGCTTTGCTGTCTGTGTGTACCACATGGTAGACATCTGG
GAGGTCTTCAATGGGCCCTTTGCCCACCGAGATGGCCCTCAGCATCAGTGGGGACCCTATGGGGGCAAGG
TGCCCTTCCCTCGCCCCGGTGTGTGTCCTAGCAAGATGACCGCACAGCCAGGCCGACCCTTTGGCAGCAC
CAAGGACTACCCAGACGAGGTGTTGCAGTTTGTCCGAGACCACCCACTCATGTTCCAGCCTGTGAGGCCT
CGGCGTGGCCGCCCTGTCCTGGTCAAAACTCACTTGGCTCAGCGACTGCGCCAGATTGTGGTGGATCGAG
TGGAGGCTGAGGATGGGACCTATGATGTCATCTTCCTAGGGACTGATTCGGGTTCTGTGCTCAAAGTCAT
TGCCCTCCAGGGTGGTGGCTTGACTGAACCTGAAGAGGTGGTTTTGGAGGAGCTCCAGGTGTTTAAGGTG
CCAACGCCCATCACTGAGATGGAGATCTCTGTCAAAAGGCAAACGCTGTATGTGGGCTCTCCACTGGGTG
TGGCCCGGCTGCAGCTGCACCAGTGTGAGACTTACGGCAGTGCCTGTGCTGAGTGCTGCCTGGCCCGGGA
CCCATACTGTGCTTGGGATGGCACTGCCTGTGCCCGCTACCGCCCCAGCTCTGGCAAGCGCAGGTTCCGT
CGGCAGGACATACGCCATGGCAACCCTGCTGTGCAGTGTCTGGGCCAGGGCCAGAGCCAAAACAAAGCAG
CTTCGGGGCTCATGACCAGAGTCTTTGGCACAGAGCACAACAGCACCTTCCTTGAGTGCCTGCCCAAGTC
TCCTCAGGCTGCAGTGCGCTGGTTCTTACAAAGGCCAGGGGATAAGGGGACTGACCAGGTGAAGACAGAT
GAGAGAGTTGTGCAGACGGCCCAAGGGCTGCTGTTCCGAAGGCTCAGCCGCCATGACGCAGGAAACTACA
CTTGCACCACTCTGGAACATGGCTTCTCCCAGACCGTGGTCCGTTTTGCCCTGGAGGTGATTGCAGCTGT
GCAACTGGACAGCCTGTTCCTTCGGGAGTCAAGGCTAGAGGAGCCCTCAGCCTGGGGAAGCCTGGCCTCT
GCCTCCCCCAAGACTTGGTATAAGGACATCCTTCAGCTCACGGGCTTCGCCAACCTGCCCCGTGTGGATG
AGTACTGTGAACGTGTATGGTGCAGGGGTGTCGGGGAGCGCTCAGGCTCCTTCCGCGGAAAGGGAAAGCA
AGCGAAGGGCAAGAGCTGGGCAGGGCTGGAACTGGGCAAGAAGATGAAGAGCAGGGTGCTGGCTGAGCAC
AATCGGACACCCCGGGAGGTAGAAGCCACATAG

Translation (780 aa):
MDPSAWAICCLLGSLLFHVGIPSPGPSPSVPRLRLSYRDLLSTNRSAIFLGPRGSLDLQVMYLDEYRDRL
FLGSRDALYSLRLDQAWPDPREVLWLPQPGQKVECVRKGKDPLTECANFVRVLQPHNRTHLLACGTGAFQ
PICTFITVGHRGEHVLRLDASSVENGRGRCPHEPSRPFASTFVGGELYTGLTADFLGREAMIFRSGGPRP
ALRSDSDQSLLHEPRFVMAARIPDNSDRDDDKVYFFFSETVPSPDGGPGHVTISRVGRVCVNDAGGQRVL
VNKWSTFLKARLVCSVPGPGGAETHFDQLEDVFLLWPKAGKSLEVYALFSTVSAVFQGFAVCVYHMVDIW
EVFNGPFAHRDGPQHQWGPYGGKVPFPRPGVCPSKMTAQPGRPFGSTKDYPDEVLQFVRDHPLMFQPVRP
RRGRPVLVKTHLAQRLRQIVVDRVEAEDGTYDVIFLGTDSGSVLKVIALQGGGLTEPEEVVLEELQVFKV
PTPITEMEISVKRQTLYVGSPLGVARLQLHQCETYGSACAECCLARDPYCAWDGTACARYRPSSGKRRFR
RQDIRHGNPAVQCLGQGQSQNKAASGLMTRVFGTEHNSTFLECLPKSPQAAVRWFLQRPGDKGTDQVKTD
ERVVQTAQGLLFRRLSRHDAGNYTCTTLEHGFSQTVVRFALEVIAAVQLDSLFLRESRLEEPSAWGSLAS
ASPKTWYKDILQLTGFANLPRVDEYCERVWCRGVGERSGSFRGKGKQAKGKSWAGLELGKKMKSRVLAEH
NRTPREVEAT


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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