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Report for CCDS23380.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23380.1 Public Mus musculus 9 Tpbg 23 108 98 CCDS HistoryNCBI Gene:21983Re-query CCDS DB by CCDS ID:23380.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23380.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006559.13 ENSMUSP00000006559.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006559.13Link to Ensembl Protein Viewer:ENSMUSP00000006559.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000006559Re-query CCDS DB by Protein ID:ENSMUSP00000006559
Original member Current member EBI ENSMUST00000098500.4 ENSMUSP00000096101.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098500.4Link to Ensembl Protein Viewer:ENSMUSP00000096101.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098500Re-query CCDS DB by Protein ID:ENSMUSP00000096101
Original member Current member NCBI NM_001164792.1 NP_001158264.1 Accepted alive Link to Nucleotide Sequence:NM_001164792.1Link to Protein Sequence:NP_001158264.1Re-query CCDS DB by Nucleotide ID:NM_001164792Re-query CCDS DB by Protein ID:NP_001158264Link to BLAST:NP_001158264.1
Original member Current member NCBI NM_011627.4 NP_035757.2 Accepted alive Link to Nucleotide Sequence:NM_011627.4Link to Protein Sequence:NP_035757.2Re-query CCDS DB by Nucleotide ID:NM_011627Re-query CCDS DB by Protein ID:NP_035757Link to BLAST:NP_035757.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158264.1 426 Q9Z0L0 426 100% 0 0
NP_035757.2 426 Q9Z0L0 426 100% 0 0

Chromosomal Locations for CCDS 23380.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 85843980 85845260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1281 nt):
ATGCCTGGGGCGGGCTCCCGGGGCCCCTCCGCCGGGGACGGACGGCTGAGGTTGGCAAGGCTGGCGCTAG
TGCTGCTGGGTTGGGTCTCCGCGTCGGCCCCCAGCTCTTCGGTACCCTCGTCTTCCACCTCCCCGGCAGC
CTTCCTGGCCTCGGGGTCTGCGCAGCCTCCGCCAGCCGAGAGATGCCCCGCGGCGTGCGAGTGCTCCGAG
GCGGCGCGCACGGTTAAGTGCGTGAACCGCAACCTGCTGGAGGTGCCGGCGGATCTACCGCCTTACGTGC
GCAACCTTTTCCTTACCGGCAACCAGATGACCGTGCTCCCGGCGGGCGCCTTCGCCCGCCAGCCGCCGCT
CGCCGACCTGGAGGCGCTCAACCTCAGCGGCAACCACCTGAAGGAAGTGTGTGCAGGTGCCTTCGAGCAT
CTGCCGGGTCTGCGCCGGCTTGACCTCAGCCACAACCCTCTCACCAACCTCAGCGCCTTCGCCTTTGCGG
GCAGCAACGCCAGCGTCTCGGCCCCCAGCCCCCTGGAGGAGCTGATCCTGAATCACATCGTGCCCCCTGA
GGATCAGAGGCAGAACGGGAGCTTCGAGGGTATGGTGGCCTTCGAAGGCATGGTGGCAGCAGCTCTGCGC
TCAGGCCTTGCACTCCGAGGTCTTACACGCCTGGAGCTAGCCAGCAATCACTTTCTTTTCCTGCCTCGGG
ACTTACTAGCCCAACTGCCGAGTCTCAGATACCTGGACCTCAGGAACAATTCCCTGGTGAGCCTGACCTA
CGCATCCTTCCGCAACCTGACACACCTCGAAAGCCTCCACTTGGAGGACAATGCCCTCAAGGTCCTTCAC
AACTCCACCTTGGCTGAGTGGCACGGCCTGGCTCATGTCAAGGTGTTCCTGGACAACAATCCCTGGGTTT
GCGACTGCTACATGGCTGACATGGTGGCTTGGCTTAAAGAGACAGAGGTGGTGCCAGATAAAGCCAGGCT
TACCTGCGCATTCCCGGAGAAAATGAGGAATCGTGGCCTCTTAGACCTCAACAGCTCTGACCTGGACTGT
GACGCTGTCCTTCCCCAATCCCTGCAGACTTCCTATGTCTTCCTAGGTATTGTTTTAGCTCTGATAGGCG
CTATTTTCCTCCTCGTTTTGTATTTGAACCGTAAAGGCATAAAAAAGTGGATGCATAACATCAGAGATGC
CTGCAGGGATCACATGGAAGGGTATCATTACAGATACGAAATCAATGCGGACCCCAGATTAACAAATCTT
AGTTCCAACTCGGATGTCTGA

Translation (426 aa):
MPGAGSRGPSAGDGRLRLARLALVLLGWVSASAPSSSVPSSSTSPAAFLASGSAQPPPAERCPAACECSE
AARTVKCVNRNLLEVPADLPPYVRNLFLTGNQMTVLPAGAFARQPPLADLEALNLSGNHLKEVCAGAFEH
LPGLRRLDLSHNPLTNLSAFAFAGSNASVSAPSPLEELILNHIVPPEDQRQNGSFEGMVAFEGMVAAALR
SGLALRGLTRLELASNHFLFLPRDLLAQLPSLRYLDLRNNSLVSLTYASFRNLTHLESLHLEDNALKVLH
NSTLAEWHGLAHVKVFLDNNPWVCDCYMADMVAWLKETEVVPDKARLTCAFPEKMRNRGLLDLNSSDLDC
DAVLPQSLQTSYVFLGIVLALIGAIFLLVLYLNRKGIKKWMHNIRDACRDHMEGYHYRYEINADPRLTNL
SSNSDV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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