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Report for CCDS37068.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37068.1 Public Mus musculus 15 Trhr 23 108 98 CCDS HistoryNCBI Gene:22045Re-query CCDS DB by CCDS ID:37068.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37068.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038856.13 ENSMUSP00000036320.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038856.13Link to Ensembl Protein Viewer:ENSMUSP00000036320.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000038856Re-query CCDS DB by Protein ID:ENSMUSP00000036320
Original member Current member EBI ENSMUST00000110289.3 ENSMUSP00000105918.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110289.3Link to Ensembl Protein Viewer:ENSMUSP00000105918.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000110289Re-query CCDS DB by Protein ID:ENSMUSP00000105918
Original member Current member EBI ENSMUST00000226626.1 ENSMUSP00000154650.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226626.1Link to Ensembl Protein Viewer:ENSMUSP00000154650.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226626Re-query CCDS DB by Protein ID:ENSMUSP00000154650
Original member Current member NCBI NM_013696.2 NP_038724.1 Accepted alive Link to Nucleotide Sequence:NM_013696.2Link to Protein Sequence:NP_038724.1Re-query CCDS DB by Nucleotide ID:NM_013696Re-query CCDS DB by Protein ID:NP_038724Link to BLAST:NP_038724.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038724.1 393 P21761 393 100% 0 0

Chromosomal Locations for CCDS 37068.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 44197086 44197874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44229158 44229544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44233462 44233467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGGAGAATGATACTGTCAGTGAAATGAACCAAACCGAGCTCCAGCCACAAGCAGCTGTGGCCCTCGAGT
ACCAGGTGGTTACCATCTTACTTGTGGTCATTATTTGTGGACTGGGCATTGTGGGCAACATCATGGTAGT
CCTGGTGGTCATGAGAACAAAGCACATGAGAACCCCTACAAACTGTTACCTGGTAAGTCTGGCTGTGGCA
GATCTCATGGTTCTGGTGGCTGCAGGCCTCCCCAACATAACCGACAGTATCTATGGTTCCTGGGTCTATG
GCTATGTTGGCTGCCTCTGCATTACATATCTCCAGTACCTAGGCATTAATGCATCTTCATGTTCAATAAC
GGCCTTTACCATTGAAAGGTACATAGCAATCTGTCACCCCATCAAAGCCCAGTTTCTCTGCACGTTTTCC
AGAGCCAAAAAAATCATCATCTTTGTCTGGGCCTTCACATCCATTTACTGTATGCTCTGGTTCTTCCTGC
TGGATCTCAACATCAGCACCTACAAAAACGCTGTTGTGGTTTCCTGTGGCTACAAGATCTCCAGGAACTA
CTACTCACCTATTTACCTAATGGACTTTGGTGTCTTTTATGTTGTGCCAATGATCCTGGCCACTGTGCTT
TATGGATTTATAGCTAGAATCCTCTTCTTAAACCCCATTCCTTCAGACCCTAAAGAAAACTCTAAGATGT
GGAAAAATGACTCAATCCATCAGAACAAGAATTTGAATTTAAATGCCACCAACAGATGCTTCAACAGCAC
TGTATCTTCCAGGAAGCAGGTCACCAAGATGCTCGCAGTGGTTGTAATTCTGTTTGCCCTTTTATGGATG
CCCTACAGGACTCTTGTGGTTGTCAACTCATTTCTCTCCAGCCCTTTCCAGGAAAATTGGTTCTTGCTCT
TTTGCAGAATTTGCATTTATCTCAACAGTGCCATCAACCCAGTGATTTACAACCTCATGTCTCAGAAATT
TCGTGCAGCCTTCAGGAAGCTCTGCAATTGCAAGCAGAAGCCCACAGAAAAAGCTGCTAACTACAGTGTG
GCCCTAAATTACAGTGTCATCAAGGAGTCAGACCGCTTCAGCACAGAGCTAGAAGATATCACCGTCACCG
ATACGTATGTGTCAACCACAAAAGTGTCCTTTGATGACACCTGCTTGGCCTCTGAGAACTAA

Translation (393 aa):
MENDTVSEMNQTELQPQAAVALEYQVVTILLVVIICGLGIVGNIMVVLVVMRTKHMRTPTNCYLVSLAVA
DLMVLVAAGLPNITDSIYGSWVYGYVGCLCITYLQYLGINASSCSITAFTIERYIAICHPIKAQFLCTFS
RAKKIIIFVWAFTSIYCMLWFFLLDLNISTYKNAVVVSCGYKISRNYYSPIYLMDFGVFYVVPMILATVL
YGFIARILFLNPIPSDPKENSKMWKNDSIHQNKNLNLNATNRCFNSTVSSRKQVTKMLAVVVILFALLWM
PYRTLVVVNSFLSSPFQENWFLLFCRICIYLNSAINPVIYNLMSQKFRAAFRKLCNCKQKPTEKAANYSV
ALNYSVIKESDRFSTELEDITVTDTYVSTTKVSFDDTCLASEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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