NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS7130.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7130.1 Public Homo sapiens 10 NSUN6 24 110 108 CCDS HistoryNCBI Gene:221078Re-query CCDS DB by CCDS ID:7130.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7130.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377304.7 ENSP00000366519.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377304.7Link to Ensembl Protein Viewer:ENSP00000366519.4Re-query CCDS DB by Nucleotide ID:ENST00000377304Re-query CCDS DB by Protein ID:ENSP00000366519
Original member Current member NCBI NM_182543.5 NP_872349.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182543.5Link to Protein Sequence:NP_872349.1Re-query CCDS DB by Nucleotide ID:NM_182543Re-query CCDS DB by Protein ID:NP_872349Link to BLAST:NP_872349.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_872349.1 469 Q8TEA1 469 100% 0 0

Chromosomal Locations for CCDS 7130.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 18545933 18546145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18548112 18548237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18551823 18551971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18585949 18586093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18596208 18596327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18609845 18609926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18614460 18614613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18616184 18616293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18642476 18642555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18648490 18648645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 18651129 18651203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1410 nt):
ATGTCTATTTTCCCTAAGATATCTTTGAGACCTGAGGTTGAAAACTATCTTAAGGAAGGCTTTATGAATA
AGGAGATTGTGACTGCTTTAGGTAAACAAGAAGCAGAAAGGAAGTTTGAAACTTTGTTAAAGCACCTGTC
ACATCCTCCATCATTTACAACTGTCAGAGTGAATACACATTTAGCCTCAGTACAACATGTGAAAAATCTG
TTACTTGATGAACTTCAGAAGCAGTTTAATGGATTAAGTGTTCCTATTCTTCAACATCCAGACCTTCAAG
ATGTGTTACTTATTCCTGTTATTGGACCCAGAAAGAATATTAAAAAACAACAGTGTGAAGCCATTGTTGG
AGCCCAGTGTGGCAATGCAGTTTTAAGAGGAGCCCATGTCTATGCCCCAGGAATTGTGTCAGCATCACAA
TTTATGAAAGCTGGAGATGTTATTTCTGTATACTCTGATATTAAAGGAAAATGTAAGAAAGGAGCCAAAG
AATTTGATGGAACAAAAGTATTTCTTGGAAATGGGATTTCTGAACTAAGCCGCAAAGAAATCTTCAGTGG
ATTACCTGAACTGAAAGGCATGGGCATAAGAATGACAGAACCAGTATATCTCAGCCCTTCATTTGACAGT
GTACTGCCCCGTTACTTATTTTTACAAAATTTGCCATCTGCCTTAGTAAGTCATGTACTAAATCCTCAAC
CTGGAGAGAAGATTCTAGACTTGTGTGCAGCACCTGGAGGGAAAACAACACACATTGCAGCACTAATGCA
TGATCAGGGAGAAGTTATAGCACTGGATAAAATCTTCAACAAAGTAGAAAAAATCAAACAGAATGCCTTA
TTGTTAGGGCTGAATTCCATCAGGGCATTTTGTTTTGATGGAACAAAGGCGGTTAAACTTGATATGGTGG
AGGACACAGAAGGAGAACCTCCATTTCTACCAGAATCCTTTGACCGAATTCTTCTGGATGCACCCTGTAG
TGGAATGGGACAGAGACCAAACATGGCCTGTACTTGGTCTGTGAAGGAAGTGGCATCATATCAGCCATTA
CAGCGAAAACTCTTCACTGCAGCGGTTCAGCTGCTGAAGCCAGAGGGTGTGCTGGTTTATAGCACGTGCA
CTATAACACTGGCCGAAAATGAAGAACAGGTTGCCTGGGCCCTGACAAAATTTCCTTGCCTTCAGCTTCA
GCCCCAGGAACCGCAGATTGGAGGAGAAGGAATGAGGGGAGCTGGGCTCTCATGTGAACAGTTGAAACAG
CTGCAGCGATTTGATCCATCGGCTGTGCCATTACCGGACACTGACATGGACTCTCTTAGAGAGGCCAGAA
GAGAAGACATGTTGCGTCTGGCTAATAAGGACTCTATAGGTTTTTTTATTGCAAAATTTGTAAAATGCAA
AAGCACATAG

Translation (469 aa):
MSIFPKISLRPEVENYLKEGFMNKEIVTALGKQEAERKFETLLKHLSHPPSFTTVRVNTHLASVQHVKNL
LLDELQKQFNGLSVPILQHPDLQDVLLIPVIGPRKNIKKQQCEAIVGAQCGNAVLRGAHVYAPGIVSASQ
FMKAGDVISVYSDIKGKCKKGAKEFDGTKVFLGNGISELSRKEIFSGLPELKGMGIRMTEPVYLSPSFDS
VLPRYLFLQNLPSALVSHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIALDKIFNKVEKIKQNAL
LLGLNSIRAFCFDGTKAVKLDMVEDTEGEPPFLPESFDRILLDAPCSGMGQRPNMACTWSVKEVASYQPL
QRKLFTAAVQLLKPEGVLVYSTCTITLAENEEQVAWALTKFPCLQLQPQEPQIGGEGMRGAGLSCEQLKQ
LQRFDPSAVPLPDTDMDSLREARREDMLRLANKDSIGFFIAKFVKCKST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH