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Report for CCDS5421.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5421.1 Public Homo sapiens 7 PRR15 24 110 108 CCDS HistoryNCBI Gene:222171Re-query CCDS DB by CCDS ID:5421.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5421.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319694.3 ENSP00000317836.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000319694.3Link to Ensembl Protein Viewer:ENSP00000317836.2Re-query CCDS DB by Nucleotide ID:ENST00000319694Re-query CCDS DB by Protein ID:ENSP00000317836
Original member Current member NCBI NM_001329996.2 NP_001316925.1 Accepted alive Link to Nucleotide Sequence:NM_001329996.2Link to Protein Sequence:NP_001316925.1Re-query CCDS DB by Nucleotide ID:NM_001329996Re-query CCDS DB by Protein ID:NP_001316925Link to BLAST:NP_001316925.1
Original member Current member NCBI NM_001329997.1 NP_001316926.1 Accepted alive Link to Nucleotide Sequence:NM_001329997.1Link to Protein Sequence:NP_001316926.1Re-query CCDS DB by Nucleotide ID:NM_001329997Re-query CCDS DB by Protein ID:NP_001316926Link to BLAST:NP_001316926.1
Original member Current member NCBI NM_175887.3 NP_787083.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_175887.3Link to Protein Sequence:NP_787083.1Re-query CCDS DB by Nucleotide ID:NM_175887Re-query CCDS DB by Protein ID:NP_787083Link to BLAST:NP_787083.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001316925.1 129 Q8IV56 129 100% 0 0
NP_001316926.1 129 Q8IV56 129 100% 0 0
NP_787083.1 129 Q8IV56 129 100% 0 0

Chromosomal Locations for CCDS 5421.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 29566330 29566719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (390 nt):
ATGGCCGACAGCGGCGATGCTGGCAGCTCCGGCCCCTGGTGGAAATCGCTCACCAACAGCAGAAAGAAAA
GCAAGGAAGCCGCAGTGGGGGTGCCGCCTCCCGCCCAGCCCGCTCCCGGGGAGCCCACGCCACCTGCGCC
GCCCAGCCCGGACTGGACCAGCAGCTCCCGGGAGAACCAGCACCCCAATCTCCTCGGGGGCGCCGGCGAG
CCCCCCAAACCAGACAAGTTATACGGGGACAAATCCGGCAGCAGCCGCCGCAATTTGAAGATCTCGCGCT
CCGGCCGCTTTAAGGAGAAGAGGAAAGTGCGCGCCACGCTGCTCCCGGAGGCGGGCAGGTCCCCGGAGGA
GGCAGGCTTTCCTGGTGACCCCCACGAGGACAAGCAGTAG

Translation (129 aa):
MADSGDAGSSGPWWKSLTNSRKKSKEAAVGVPPPAQPAPGEPTPPAPPSPDWTSSSRENQHPNLLGGAGE
PPKPDKLYGDKSGSSRRNLKISRSGRFKEKRKVRATLLPEAGRSPEEAGFPGDPHEDKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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