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Report for CCDS38432.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38432.1 Public Mus musculus 3 Spart 23 108 98 CCDS HistoryNCBI Gene:229285Re-query CCDS DB by CCDS ID:38432.1Re-query CCDS DB by GeneID:229285See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38432.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044116.13 ENSMUSP00000042367.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044116.13Link to Ensembl Protein Viewer:ENSMUSP00000042367.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000044116Re-query CCDS DB by Protein ID:ENSMUSP00000042367
Original member Current member EBI ENSMUST00000118118.7 ENSMUSP00000113621.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118118.7Link to Ensembl Protein Viewer:ENSMUSP00000113621.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118118Re-query CCDS DB by Protein ID:ENSMUSP00000113621
Original member Current member NCBI NM_001144987.1 NP_001138459.1 Accepted alive Link to Nucleotide Sequence:NM_001144987.1Link to Protein Sequence:NP_001138459.1Re-query CCDS DB by Nucleotide ID:NM_001144987Re-query CCDS DB by Protein ID:NP_001138459Link to BLAST:NP_001138459.1
Original member Current member NCBI NM_144895.2 NP_659144.1 Accepted alive Link to Nucleotide Sequence:NM_144895.2Link to Protein Sequence:NP_659144.1Re-query CCDS DB by Nucleotide ID:NM_144895Re-query CCDS DB by Protein ID:NP_659144Link to BLAST:NP_659144.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138459.1 671 Q8R1X6-1 671 100% 0 0
NP_659144.1 671 Q8R1X6-1 671 100% 0 0

Chromosomal Locations for CCDS 38432.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 55116986 55117795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 55121600 55121797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 55124755 55124925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 55126534 55126654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 55127495 55127689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 55128217 55128375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 55128499 55128589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 55135410 55135680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2016 nt):
ATGGAGAGAGAACCAGAAAATGGAGAACCTGCTGAAATTAAGATCATCAAGGAAGCATACGAGAAGGCCT
TTATGTTTGTTAATAAAGGACTGAACACGGACGAGTTAGGGCAGAAGGAAGAAGCAAAGAACTATTACAA
GCAAGGAATAGGACACCTGCTTAGGGGCATCAGCATCGCGGCTGCAGAGCCGGGGCACACAGGCCCTGCG
TGGGAGGCTGCCAGGCAGATGCAACAGAAAATGAAGGAAACGCTTCAGAACGTCCGCACCAGGCTAGAGA
TCCTGGAGAAGGGCCTTGCCACTTCTCTACGGAATGACCTTCAGGATGTGCCCAAGCTATACCCAGAGTT
CCCGCCTAAAGACGCGTGCAAGAAGTCCCCAGAGCAGGAGTCCGTTAGTACAGCGCCCCAGCGTGCTGAA
GTCGATGGGAGCGCCTCAGCCGCGTGTGCCGGCCCAAGTGGTGCGCCTTCTGCTCTGCCCGTACCATCGC
CCAGCTGCCCTGCCGAAGCGCCACCAGCCTACAGCCCACAGGCTGCTGAGGGCCACTACACTGTTTCCTA
TGGAACAGATTCCGGGGAGTTTTCATCCGTGGGAGAAGACTTCTACAGGAACCGTTCCCAGCCGCCCCCT
CTTGAGACCTTGGGGCTCGATGCAGATGAGTTGATCTTGATACCAAACGGAGTGCAGATCTTTTTTGTAA
ACCCTGCGGGAGAGGTCAGTGCTCCCTCGTACCCTGGGTATCTGCGGATCGTGCGGTTCTTGGATAATTC
TCTGGATACAGTTCTGAACCGCCCTCCTGGGTTTCTCCAGGTGTGTGACTGGTTATACCCTCTAGTTCCT
GATAGGTCACCAGTTCTGAAGTGCACTGTGGGAGCCTACATGTTTCCAGATACCATGTTACAAGCTGCTG
GGTGCTTCGTAGGGGTTGTTCTTTCATCTGAGCTCCCAGAAGATGACAGAGAGCTGTTTGAGGATCTGTT
GAGACAGATGTCTGACCTTCGGCTCCAGGCCAACTGGAATAGAGAAGAAGATGAATTCCAAATCCCTGGG
AGATCAAGTCACCCCTCTGAACCACCGAAGGAAGCTTCTGGCACTGATGTCAGGCAGTCAAGTTCTTCAG
GTTCCTCAATAGACCAAGGCAGCAAGGATGCCCGCCATAAAGGAAAGCGTGGGAAAAAGACCAAAGATTC
AAGTGAAGAAGTTAATCTGAGCCAGATTGTGCCCTGTGAGCCGAGTTCAGAAGAAAAATCGAAAGAATTG
CCTGAATGGAGCGAGAAAGTGGCCCACAACATCCTGTCAGGTGCTTCCTGGGTGAGCTGGGGTTTAGTCA
AAGGTGCTGAATTTACTGGCAAAGCAATTCAGAAAGGTGCTTCTAAACTCAGAGAGCGCATTCAGCCGGA
GGAAAAGCCAGTGGAGGTGAGCCCAGCTGTCACCAGGGGTCTCTACATAGCGAAGCAGGCAACCGGAGGA
GCAGCCAAAGTCAGCCAGCTCCTGGTTGACGGCGTCTGCACAGTAGCGAATTGTGTTGGTAAAGAACTTG
CTCCACACGTCAAGAAGCACGGAAGCAAACTGGTTCCGGAATCCCTGAAGAGGGACAAAGACGGGAAATC
TGCCCTGGATGGCGCCATGGTCGTGGCAGCGAGTAGTGTTCAAGGATTCTCAACTGTCTGGCAAGGGTTG
GAATGTGCAGCTAAATGCATCGTTAACAACGTGTCTGCAGAAACTGTACAGACTGTGAGATACAAGTATG
GGCACAACGCAGGAGAAGCTACACATAACGCAGTGGATTCAGCTATCAATGTTGGGCTCACTGCCTACAA
TATTGACAACATCGGCATCAAAGCCATGGTGAAGAAAACTGCCAAGCAGACGGGACACACTCTCCTCGAG
GACTACCAGATCGTTGAGCGCCCTCAGAGGGAGAGTCAGGGAGGAGCCACAAGCACAGAAGGGAGAAGAG
ACATAGGAAAGCAGGTGGAGGAAGAGAAGCCAGGGGCAGGAAAGAAGGACAAATAA

Translation (671 aa):
MEREPENGEPAEIKIIKEAYEKAFMFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISIAAAEPGHTGPA
WEAARQMQQKMKETLQNVRTRLEILEKGLATSLRNDLQDVPKLYPEFPPKDACKKSPEQESVSTAPQRAE
VDGSASAACAGPSGAPSALPVPSPSCPAEAPPAYSPQAAEGHYTVSYGTDSGEFSSVGEDFYRNRSQPPP
LETLGLDADELILIPNGVQIFFVNPAGEVSAPSYPGYLRIVRFLDNSLDTVLNRPPGFLQVCDWLYPLVP
DRSPVLKCTVGAYMFPDTMLQAAGCFVGVVLSSELPEDDRELFEDLLRQMSDLRLQANWNREEDEFQIPG
RSSHPSEPPKEASGTDVRQSSSSGSSIDQGSKDARHKGKRGKKTKDSSEEVNLSQIVPCEPSSEEKSKEL
PEWSEKVAHNILSGASWVSWGLVKGAEFTGKAIQKGASKLRERIQPEEKPVEVSPAVTRGLYIAKQATGG
AAKVSQLLVDGVCTVANCVGKELAPHVKKHGSKLVPESLKRDKDGKSALDGAMVVAASSVQGFSTVWQGL
ECAAKCIVNNVSAETVQTVRYKYGHNAGEATHNAVDSAINVGLTAYNIDNIGIKAMVKKTAKQTGHTLLE
DYQIVERPQRESQGGATSTEGRRDIGKQVEEEKPGAGKKDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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