CCDS Report for Consensus CDS

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Report for CCDS5113.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
5113.1	Public	Homo sapiens	6	RFX6	24	110	108

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5113.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000332958.3	ENSP00000332208.2	MANE Select	Accepted	alive
		NCBI	NM_173560.4	NP_775831.2	MANE Select	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_775831.2	928	Q8HWS3	928	100%	0	0

Chromosomal Locations for CCDS 5113.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)

Genome Browser links:

Chromosome	Start	Stop
6	116877276	116877498
6	116877796	116877952
6	116880544	116880667
6	116882367	116882428
6	116893987	116894064
6	116895180	116895207
6	116910935	116911042
6	116916008	116916085
6	116916201	116916314
6	116918037	116918086
6	116919137	116919296
6	116920310	116920454
6	116922042	116922151
6	116923107	116923224
6	116924669	116924791
6	116925453	116925659
6	116927027	116927539
6	116928759	116928971
6	116931331	116931506

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2787 nt):
ATGGCCAAGGTCCCGGAGCTGGAAGACACCTTCCTGCAGGCGCAGCCTGCGCCCCAACTGTCCCCGGGGA TCCAGGAAGACTGCTGTGTGCAGCTCCTGGGCAAGGGCTTGCTAGTCTATCCGGAAGAAACAGTGTACCT GGCGGCCGAAGGGCAGCCCGGGGGCGAGCAGGGCGGCGGGGAGAAAGGCGAAGACCCGGAGCTGCCGGGG GCAGTGAAATCAGAAATGCACTTAAACAATGGTAACTTTTCCTCTGAAGAAGAGGACGCCGACAACCACG ACAGCAAAACCAAAGCAGCGGATCAATACCTGTCTCAGAAGAAAACCATCACGCAGATTGTGAAGGATAA AAAGAAGCAGACACAGCTCACGCTGCAGTGGCTTGAAGAGAATTACATTGTATGTGAAGGAGTTTGCTTA CCACGGTGCATTCTTTATGCACACTACTTAGATTTCTGTAGGAAAGAGAAATTAGAGCCAGCCTGTGCGG CCACCTTTGGAAAGACAATTCGCCAGAAGTTTCCCCTCCTAACAACAAGGCGGCTTGGAACAAGAGGCCA TTCAAAGTATCATTACTATGGGATTGGCATCAAAGAGAGCAGTGCATATTACCACTCCGTTTATTCTGGA AAGGGCTTGACAAGGTTTTCTGGAAGCAAGCTAAAGAATGAGGGTGGCTTCACTCGTAAATATTCGCTTA GCTCAAAAACTGGAACACTTCTTCCAGAATTCCCCAGCGCTCAACACCTTGTATACCAAGGATGCATTTC TAAGGACAAGGTTGATACGCTCATAATGATGTACAAAACTCACTGCCAGTGTATCCTGGACAATGCAATT AATGGAAACTTTGAAGAGATCCAGCATTTTTTATTACACTTTTGGCAAGGAATGCCTGACCATCTCCTTC CCCTGCTCGAAAATCCTGTTATCATTGATATTTTCTGTGTTTGTGACTCAATTCTTTATAAGGTTCTTAC AGATGTACTCATTCCTGCAACAATGCAAGAAATGCCTGAAAGCTTATTAGCAGACATAAGAAATTTTGCT AAAAATTGGGAACAGTGGGTTGTTTCATCCTTGGAAAACTTGCCAGAAGCTCTAACTGACAAGAAAATAC CTATTGTGCGAAGATTTGTATCTTCTCTGAAACGACAAACATCTTTCTTACATCTTGCCCAGATTGCCAG ACCAGCTCTCTTTGACCAGCATGTCGTTAATTCTATGGTGTCTGATATTGAAAGGGTTGATTTGAACAGC ATTGGCTCTCAAGCCCTTCTTACCATTTCAGGCAGCACAGACACTGAATCTGGTATCTACACTGAACATG ACTCTATCACTGTGTTCCAAGAACTGAAGGATCTCCTTAAGAAGAATGCCACTGTGGAGGCTTTTATTGA ATGGTTGGATACTGTGGTAGAACAGAGAGTTATTAAGACCAGCAAACAAAATGGAAGGTCATTAAAGAAG AGAGCTCAAGACTTTCTGTTAAAGTGGAGTTTTTTTGGTGCTCGAGTAATGCATAATCTCACCTTGAACA ATGCATCCAGTTTTGGTTCTTTTCATTTGATTCGAATGCTTCTCGATGAATACATTCTCCTGGCCATGGA GACCCAGTTTAATAATGACAAAGAGCAGGAGTTACAGAATTTATTGGACAAGTATATGAAGAATTCAGAT GCGAGTAAAGCTGCTTTCACTGCTTCTCCGAGTTCATGCTTTCTGGCCAACCGTAATAAAGGGAGCATGG TTTCCAGCGACGCTGTGAAGAATGAAAGCCACGTGGAGACAACCTATCTCCCTCTGCCATCCAGTCAACC TGGAGGCCTAGGCCCTGCTCTGCACCAGTTCCCTGCTGGGAACACAGACAACATGCCGCTCACAGGTCAA ATGGAGCTTTCACAGATTGCTGGTCATCTGATGACACCACCCATTTCTCCAGCCATGGCAAGCCGAGGAA GTGTCATTAACCAAGGACCAATGGCAGGGAGGCCCCCAAGTGTGGGCCCAGTACTGTCAGCTCCATCACA CTGCTCCACATACCCAGAGCCCATTTATCCCACTCTCCCTCAAGCCAATCATGACTTTTATAGCACCAGC TCTAACTACCAGACTGTGTTTAGGGCACAGCCCCACTCCACATCAGGACTCTATCCTCATCACACCGAGC ATGGTCGATGCATGGCTTGGACTGAACAGCAGCTTTCAAGAGACTTCTTCAGTGGCAGCTGTGCGGGGTC TCCATATAACTCCCGGCCACCGTCTAGCTATGGCCCATCCCTGCAAGCCCAGGATTCACACAATATGCAG TTTTTAAATACAGGAAGCTTCAATTTCTTGAGCAACACAGGAGCTGCCAGCTGCCAAGGAGCAACACTGC CTCCTAATTCACCAAATGGATACTATGGAAGCAACATAAACTACCCAGAGTCTCACAGGCTCGGATCAAT GGTGAATCAGCACGTTTCTGTCATCAGCAGCATTCGTTCACTGCCCCCCTACAGTGACATCCACGATCCA CTTAACATTTTAGATGACAGTGGTAGAAAACAGACCAGCTCGTTTTACACAGACACATCATCTCCAGTTG CATGTCGAACTCCAGTCCTAGCTTCCAGTTTGCAAACCCCAATTCCTTCTTCCTCATCCCAATGTATGTA TGGAACTTCCAACCAGTATCCAGCTCAAGAAACCCTGGACTCCCATGGAACAAGCAGTAGAGAAATGGTG TCCTCTTTACCACCTATCAACACTGTGTTCATGGGAACAGCAGCTGGAGGCACTTAA
Translation (928 aa):
MAKVPELEDTFLQAQPAPQLSPGIQEDCCVQLLGKGLLVYPEETVYLAAEGQPGGEQGGGEKGEDPELPG AVKSEMHLNNGNFSSEEEDADNHDSKTKAADQYLSQKKTITQIVKDKKKQTQLTLQWLEENYIVCEGVCL PRCILYAHYLDFCRKEKLEPACAATFGKTIRQKFPLLTTRRLGTRGHSKYHYYGIGIKESSAYYHSVYSG KGLTRFSGSKLKNEGGFTRKYSLSSKTGTLLPEFPSAQHLVYQGCISKDKVDTLIMMYKTHCQCILDNAI NGNFEEIQHFLLHFWQGMPDHLLPLLENPVIIDIFCVCDSILYKVLTDVLIPATMQEMPESLLADIRNFA KNWEQWVVSSLENLPEALTDKKIPIVRRFVSSLKRQTSFLHLAQIARPALFDQHVVNSMVSDIERVDLNS IGSQALLTISGSTDTESGIYTEHDSITVFQELKDLLKKNATVEAFIEWLDTVVEQRVIKTSKQNGRSLKK RAQDFLLKWSFFGARVMHNLTLNNASSFGSFHLIRMLLDEYILLAMETQFNNDKEQELQNLLDKYMKNSD ASKAAFTASPSSCFLANRNKGSMVSSDAVKNESHVETTYLPLPSSQPGGLGPALHQFPAGNTDNMPLTGQ MELSQIAGHLMTPPISPAMASRGSVINQGPMAGRPPSVGPVLSAPSHCSTYPEPIYPTLPQANHDFYSTS SNYQTVFRAQPHSTSGLYPHHTEHGRCMAWTEQQLSRDFFSGSCAGSPYNSRPPSSYGPSLQAQDSHNMQ FLNTGSFNFLSNTGAASCQGATLPPNSPNGYYGSNINYPESHRLGSMVNQHVSVISSIRSLPPYSDIHDP LNILDDSGRKQTSSFYTDTSSPVACRTPVLASSLQTPIPSSSSQCMYGTSNQYPAQETLDSHGTSSREMV SSLPPINTVFMGTAAGGT

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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