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Report for CCDS51818.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51818.1 Public Mus musculus 6 1700003E16Rik 23 108 98 CCDS HistoryNCBI Gene:71837Re-query CCDS DB by CCDS ID:51818.1Re-query CCDS DB by GeneID:71837See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51818.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032106.5 ENSMUSP00000032106.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032106.5Link to Ensembl Protein Viewer:ENSMUSP00000032106.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000032106Re-query CCDS DB by Protein ID:ENSMUSP00000032106
Original member Current member NCBI NM_027948.1 NP_082224.1 Accepted alive Link to Nucleotide Sequence:NM_027948.1Link to Protein Sequence:NP_082224.1Re-query CCDS DB by Nucleotide ID:NM_027948Re-query CCDS DB by Protein ID:NP_082224Link to BLAST:NP_082224.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082224.1 598 Q9DAQ4-1 598 100% 0 0

Chromosomal Locations for CCDS 51818.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 83156573 83156590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83160912 83161133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83161216 83161437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83161557 83162891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1797 nt):
ATGAGTCACGAAGGCTCGAGGCAGGCGCGAGATCGTGGGGTGACCCGATCCAAGGCAGAAAAAGCCCGGC
CACCCACCCAGCCGGTGCCGCAGGTGGACATCGTGCCTGGGAGACTCAATGAGGCAGAATGGATTGCGTT
TATGTCCCTGGAGGAGGGCGAGGACGTAGTGGGTGACATCTTGGCTGACCTTATGACTCGAGTTATGGAG
TGTGCCTTCAAAGTCTATCTGACCCAGCAGTGCGTTCCATTCACCATTAGCCAGGCCCGAGAGGCCATGC
TGCAGATCACTGAGTGGCGCTTCCTGGCCCGAGATGAGGGAGAATCTGCAGTGGCTGAGGACCCCACGTG
GGGAGAGGATGAGGAGCCCCTGGCATGCACTACGGATTCCTGGGCCCAGGGCTCCGTGCCTGTTCTGCAC
ACACCGGCGCCCGTTTGTGTAGAGGAGCAGTTCCACAACGAAGAACCTGGGAACCCGGACCAGTTCCTTT
TAGGTTCATCGTGGGACAAAGAGTCCCAAAAGCCGACACAACCTTCAGAACCTTCTGCCGAGCCCAAAGT
CACCCCGAGACCCACGGCCACCTTGGAGGCGTTTGAGGAAGCTGAGCCCGGGGATGCCTTGGAAGTACCC
CACGGCCAAGAGGGAAGCCATATGTTGGCTGTGCCCTCGAAGGAGTCTTTACGATCTACGGCGGAAGGCG
AGCGCGTCTACAGCCCCCAGTCTTCTCTGAAGCAGCCCCAAGTAGTCCGTCTTCAGGCCTCTGAGAAGGA
ATCATCCTTCGGCTCACACCTGTCGCTCGAGGATCTTTACCTCTGCATGCCCCAGCCAGACGCGGCAGGG
GACCGGCTGAGCTTGCAGAGCAAGGGCCAGCTCCACAGCAGCCCGATAGGGTCGGAGTCCCACCTCGGTG
CACTCACCCCGGCAGAGCCCTCCGCGTTCCAGGAGCCTGAAGTCTTGGGAGAGCGGCCAAAGCACAAGAC
CACCACGTTGCGCATGGATTCCTCGCGGCTGCCCCGCCACTGGGTGCGCCCCGTGGCCGAGGTCCTGATC
CCAGACCTCGAAGTGCACCCTTTGGAAATATATCGCGGGCGCCCGCGCAGGAGCCAAGCTGGGACCGCAA
CCTCAGCATGCGAGTCCCAAGCCCTTAGCTCGCGTGCTCCCTCCAAACCCCATGTCTCTAGCCCAAGGTT
CCCTCTCCAGCGTTGTGCTACATTCCGTGCTTTGGGCCCGGATCCTAGTTTAAACTTGGCCCAAACCTCA
CCGTCCTTCGGGTCAAACGTGCCATTCCTCAGCCCCGGGTTCCGCTTCCTCCCTAGAAACCCAATCCCTC
CCGACGTCGCCAGCACCCCTACCCCCAAACTATGGCCCCTAGCTAAGTGGCCAAGTGGCTGGGAGCGGGA
GGCGGAGCAGCTGGGAGAGCTGTGGGCGGGTCGGACTCGCGTGCCTCCACAGGGTCAGGAACCTGTGGAG
GTGACACCTTTGGAGGAGGACTCTGGATGGCCCCTAGCGGCGCCCCAGGTCCTCGAGGCTACGTCCCAAG
TGCTTTGGAAGCCCATGGTTATTTCAGAAACCATGAAGCTGGTTCCTGGTGTGAGTATGTGGAACCGGGG
AACCCAGGAGCTGCTCAATCCTGCTGTCATCCGGAAGGAGGCTGAAGAAGGCACCCCCCAGGCGCCTGAG
CAGCAACCCATCCAGACAGGTGTGTCCAAGCCTCAGGTGATTATGAAACAGATAAGGAACGAGACCCCCA
AAGCCTGGCTGCTCCCCACCAAGCCTGTGCCCCACTCTGGGTCCTGA

Translation (598 aa):
MSHEGSRQARDRGVTRSKAEKARPPTQPVPQVDIVPGRLNEAEWIAFMSLEEGEDVVGDILADLMTRVME
CAFKVYLTQQCVPFTISQAREAMLQITEWRFLARDEGESAVAEDPTWGEDEEPLACTTDSWAQGSVPVLH
TPAPVCVEEQFHNEEPGNPDQFLLGSSWDKESQKPTQPSEPSAEPKVTPRPTATLEAFEEAEPGDALEVP
HGQEGSHMLAVPSKESLRSTAEGERVYSPQSSLKQPQVVRLQASEKESSFGSHLSLEDLYLCMPQPDAAG
DRLSLQSKGQLHSSPIGSESHLGALTPAEPSAFQEPEVLGERPKHKTTTLRMDSSRLPRHWVRPVAEVLI
PDLEVHPLEIYRGRPRRSQAGTATSACESQALSSRAPSKPHVSSPRFPLQRCATFRALGPDPSLNLAQTS
PSFGSNVPFLSPGFRFLPRNPIPPDVASTPTPKLWPLAKWPSGWEREAEQLGELWAGRTRVPPQGQEPVE
VTPLEEDSGWPLAAPQVLEATSQVLWKPMVISETMKLVPGVSMWNRGTQELLNPAVIRKEAEEGTPQAPE
QQPIQTGVSKPQVIMKQIRNETPKAWLLPTKPVPHSGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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