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Report for CCDS17785.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17785.1 Public Mus musculus 3 Vcam1 23 108 98 CCDS HistoryNCBI Gene:22329Re-query CCDS DB by CCDS ID:17785.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17785.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029574.12 ENSMUSP00000029574.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029574.12Link to Ensembl Protein Viewer:ENSMUSP00000029574.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029574Re-query CCDS DB by Protein ID:ENSMUSP00000029574
Original member Current member NCBI NM_011693.3 NP_035823.3 Accepted alive Link to Nucleotide Sequence:NM_011693.3Link to Protein Sequence:NP_035823.3Re-query CCDS DB by Nucleotide ID:NM_011693Re-query CCDS DB by Protein ID:NP_035823Link to BLAST:NP_035823.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035823.3 739 P29533-1 739 99.8647% 0 1

Chromosomal Locations for CCDS 17785.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 116110877 116111037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116114353 116114619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116115885 116116151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116117223 116117543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116120798 116121073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116124383 116124649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116125955 116126275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116128533 116128808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116129304 116129367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2220 nt):
ATGCCTGTGAAGATGGTCGCGGTCTTGGGAGCCTCAACGGTACTTTGGATACTGTTTGCAGTCTCTCAAG
CT
TTTAAAATCGAGATCTCCCCTGAATACAAAACGATTGCTCAAATCGGTGACTCCATGGCCCTCACTTG
C
AGCACTACGGGCTGCGAGTCACCATTGTTCTCATGGAGAACCCAGATAGACAGCCCACTAAACGCGAAG
GTG
AGGACGGAGGGGTCCAAGTCCGTTCTGACCATGGAGCCTGTCAGTTTTGAGAATGAACACTCTTACC
TG
TGCACAGCAACATGTGGCTCTGGGAAGCTGGAACGAAGTATCCACGTGGACATCTACTCTTTCCCCAA
G
GATCCAGAGATTCAATTCAGTGGCCCCCTGGAGGTTGGGAAGCCGGTCACGGTCAAGTGTTTGGCTCCA
GAC
ATTTACCCAGTTTACAGGCTGGAGATTGATCTGTTCAAGGGTGACCAGCTCATGAACAGACAGGAGT
TT
TCTTCAGAAGAGATGACAAAGTCTCTAGAAACCAAGAGTTTGGAAGTAACCTTTACTCCCGTCATTGA
G
GATATTGGAAAAGCTCTTGTTTGCCGAGCTAAATTACACATTGACCAAATTGATTCTACACTCAAAGAA
AGG
GAGACTGTCAAAGAACTACAAGTCTACATCTCTCCCAGGAATACAACGATCTCTGTACATCCCTCCA
CA
AGGCTTCAAGAGGGTGGTGCTGTGACAATGACCTGTTCCAGCGAGGGTCTACCAGCTCCTGAGATTTT
C
TGGGGCAGGAAGTTAGATAATGAAGTTCTCCAGCTTCTCTCAGGAAATGCCACCCTCACCTTAATTGCT
ATG
AGGATGGAAGACTCTGGAGTCTATGTGTGTGAAGGAGTTAATCTGATTGGGAGAGACAAAGCAGAAG
TG
GAATTAGTTGTTCAAGAGAAACCATTTATTGTTGACATCTCCCCCGGATCTCAGGTGGCTGCACAAGT
T
GGGGATTCGGTTGTTCTGACGTGTGCTGCTATTGGCTGTGACTCCCCTTCTTTTTCTTGGAGAACCCAG
ACA
GACAGTCCCCTCAATGGGGTGGTAAGGAATGAGGGGGCCAAATCCACGCTTGTGTTGAGCTCTGTGG
GT
TTTGAGGATGAACACTCTTACCTGTGCGCTGTGACCTGTCTGCAAAGGACACTGGAAAAGAGAACCCA
G
GTGGAGGTCTACTCATTCCCTGAAGATCCAGTAATTAAAATGAGTGGGCCACTTGTGCATGGGAGACCT
GTC
ACTGTCAACTGCACAGTCCCTAATGTGTATCCCTTTGACCATCTGGAGATTGAATTACTGAAGGGGG
AG
ACTACACTGATGAAGAAATATTTTTTGGAGGAAATGGGCATAAAGTCCCTAGAGACCAAAATTTTGGA
A
ACGACCTTCATCCCCACCATTGAAGATACCGGGAAATCTCTTGTTTGCCTCGCTAGGTTACACAGTGGT
GAA
ATGGAATCTGAACCCAAACAGAGGCAGAGTGTACAGCCTCTTTATGTCAACGTTGCCCCCAAGGAAA
CC
ACCATCTGGGTCAGCCCCTCTCCTATACTAGAGGAGGGCAGTCCTGTGAACCTGACCTGCTCAAGTGA
T
GGGATACCAGCTCCCAAAATCCTGTGGAGCAGACAGCTAAATAATGGGGAACTGCAGCCTCTTTCTGAA
AAT
ACTACACTCACCTTCATGTCTACAAAAAGGGACGATTCCGGCATTTATGTGTGTGAAGGGATTAACG
AG
GCTGGAATTAGCAGAAAATCAGTTGAACTGATTATCCAAGTCTCTCCAAAAGATATACAGCTTACAGT
C
TTTCCATCTAAGAGTGTCAAAGAGGGAGACACCGTCATTATCTCCTGCACTTGTGGAAATGTGCCCGAA
ACA
TGGATAATCCTGAAGAAGAAAGCAAAGACAGGAGACATGGTATTAAAGTCTGTGGATGGCTCGTACA
CC
ATCCGCCAGGCACAGCTGCAGGATGCCGGCATATACGAGTGTGAATCTAAGACTGAAGTTGGCTCACA
A
TTAAGAAGTTTAACACTTGATGTAAAAGGAAAAGAACATAACAAGAACTATTTTTCGCCCGAACTCCTT
GCA
CTCTACTGCGCATCTTCCTTGGTAATACCTGCCATCGGGATGATCGTTTATTTTGCAAGAAAAGCTA
AC
ATGAAAGGATCGTACAGTCTGGTGGAGGCACAGAAATCCAAAGTGTAG


Translation (739 aa):
MPVKMVAVLGASTVLWILFAVSQAFKIEISPEYKTIAQIGDSMALTCSTTGCESPLFSWRTQIDSPLNAK
V
RTEGSKSVLTMEPVSFENEHSYLCTATCGSGKLERSIHVDIY
SFPKDPEIQFSGPLEVGKPVTVKCLAP
D
IYPVYRLEIDLFKGDQLMNRQEFSSEEMTKSLETKSLEVTFTPVIEDIGKALVCRAKLHIDQIDSTLKE
R
ETVKELQVY
ISPRNTTISVHPSTRLQEGGAVTMTCSSEGLPAPEIFWGRKLDNEVLQLLSGNATLTLIA
M
RMEDSGVYVCEGVNLIGRDKAEVELVVQ
EKPFIVDISPGSQVAAQVGDSVVLTCAAIGCDSPSFSWRTQ
T
DSPLNGVVRNEGAKSTLVLSSVGFEDEHSYLCAVTCLQRTLEKRTQVEVY
SFPEDPVIKMSGPLVHGRP
V
TVNCTVPNVYPFDHLEIELLKGETTLMKKYFLEEMGIKSLETKILETTFIPTIEDTGKSLVCLARLHSG
E
MESEPKQRQSVQPLYVN
VAPKETTIWVSPSPILEEGSPVNLTCSSDGIPAPKILWSRQLNNGELQPLSE
N
TTLTFMSTKRDDSGIYVCEGINEAGISRKSVELIIQ
VSPKDIQLTVFPSKSVKEGDTVIISCTCGNVPE
T
WIILKKKAKTGDMVLKSVDGSYTIRQAQLQDAGIYECESKTEVGSQLRSLTLDVK
GKEHNKNYFSPELL
A
LYCASSLVIPAIGMIVYFARKANMKGSYSLVEAQKSKV




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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