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Report for CCDS49826.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49826.1 Public Mus musculus 16 Ubxn7 23 108 98 CCDS HistoryNCBI Gene:224111Re-query CCDS DB by CCDS ID:49826.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49826.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115151.4 ENSMUSP00000110804.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115151.4Link to Ensembl Protein Viewer:ENSMUSP00000110804.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000115151Re-query CCDS DB by Protein ID:ENSMUSP00000110804
Original member NCBI NM_177633.4 NP_808301.3 Updated not alive Link to Nucleotide Sequence:NM_177633.4Link to Protein Sequence:NP_808301.3Re-query CCDS DB by Nucleotide ID:NM_177633Re-query CCDS DB by Protein ID:NP_808301
Current member NCBI NM_177633.5 NP_808301.3 Accepted alive Link to Nucleotide Sequence:NM_177633.5Link to Protein Sequence:NP_808301.3Re-query CCDS DB by Nucleotide ID:NM_177633Re-query CCDS DB by Protein ID:NP_808301Link to BLAST:NP_808301.3

Chromosomal Locations for CCDS 49826.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 32332288 32332360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32352799 32352946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32360008 32360075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32367344 32367409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32369315 32369427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32372394 32372540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32375227 32375317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32375897 32376024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32381262 32381655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32381766 32381845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32384774 32384935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGGCTGCCCACGGGGGCTCCGCGGCGTCGTCGGCGCTGAAGGGGTTAATCCAGCAGTTCACCGCCATCA
CCGGTGCAAGTGAAAGTGTAGGAAAACATATGCTTGAAGCTTGTAACAACAACCTGGAGATGGCTGTCAC
TATGTTTTTGGATGGAGGAGGAATTGCTGAGGAGCCTAGTACCAGTTCAGCAAGCGTCTCTACTGTCAGA
CCACACACAGAAGAAGAAGTTCGTGCTCCAATTCCTCAAAAGCAAGAAATATTGGTGGAGCCAGAGCCTT
TGTTTGGTGCTCCTAAAAGGAGAAGGCCAGCACGTTCAATATTTGATGGTTTCCGAGATTTTCAAACTGA
AACTATTAGGCAGGAACAGGAATTAAGAAATGGAGGAGCAATAGATAAGAAACTAACCACCCTTGCAGAT
CTATTTCGGCCCCCAATCGACTTGATGCACAAGGGCAGCTTTGAAACAGCCAAAGAGTGTGGCCAGATGC
AGAATAAGTGGCTGATGATAAACATTCAAAATGTACAAGACTTTGCATGCCAGTGCCTCAACCGTGATGT
ATGGAGCAATGAAGCTGTGAAGAATATTATCCGGGAACATTTCATTTTCTGGCAGGTTTATCACGACAGT
GAGGAAGGTCAGAGATACATACAGTTTTATAAGCTAGGGGATTTCCCCTATGTTTCCATCTTAGATCCAC
GGACAGGTCAGAAGCTAGTAGAGTGGCACCAGTTGGATGTGTCTTCTTTCTTGGACCAAGTGACAGGGTT
TCTGGGAGAACATGGGCAACTGGATGGACTTTCTAGCAGCCCCCCCAAAAAGTGTGCCCGATCAGAGAGC
CTCATAGATGCTAGTGAAGACAGCCAACTGGAAGCTGCCATCAGAGCCTCCTTGCAAGAGACACATTTCG
ACTCGGCCCAGGCAAAACAGGATAGCCGCTCAGATGAAGAATCTGAATCGGAACTTTTTTCTGGCAGTGA
GGAATTCATATCGGTTTGTGGCTCTGATGAAGAAGAGGAGGTAGAGAATCTTGCTAAGTCCAGAAAGTCT
CCTCATAAAGATTTGGGGCATAGAAAAGAGGAGAACAGAAGGCCACTGACAGAGCCCCCAGCCAGAACTG
AGCCTGGCACAGCCACAAACCATCAAGGATTGCCATCCATGGATTCTGAGGTCTTGGAGATGTCACCTGA
AAAGTCAGATGGAATAGTGGAGGGGATAGATGTAAATGGACCAAAAGCACAGCTGATGCTGCGGTACCCA
GATGGAAAAAGGGAACAGATCACTCTTCCAGAGCAAGCCAAATTACTGGCGTTGGTGAAGCATGTCCAGT
CTAAAGGATATCCAAATGAACGTTTTGAACTTCTCACCAACTTCCCTCGGAGGAAGCTCTCTCATCTGGA
CTATGACATTACCTTACAAGAGGCTGGCCTCTGTCCTCAAGAGACTGTCTTTGTACAGGAAAGAAATTAA

Translation (489 aa):
MAAHGGSAASSALKGLIQQFTAITGASESVGKHMLEACNNNLEMAVTMFLDGGGIAEEPSTSSASVSTVR
PHTEEEVRAPIPQKQEILVEPEPLFGAPKRRRPARSIFDGFRDFQTETIRQEQELRNGGAIDKKLTTLAD
LFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDS
EEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGEHGQLDGLSSSPPKKCARSES
LIDASEDSQLEAAIRASLQETHFDSAQAKQDSRSDEESESELFSGSEEFISVCGSDEEEEVENLAKSRKS
PHKDLGHRKEENRRPLTEPPARTEPGTATNHQGLPSMDSEVLEMSPEKSDGIVEGIDVNGPKAQLMLRYP
DGKREQITLPEQAKLLALVKHVQSKGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQERN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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