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Report for CCDS50043.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50043.1 Public Mus musculus 17 Lemd2 23 108 98 CCDS HistoryNCBI Gene:224640Re-query CCDS DB by CCDS ID:50043.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50043.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055117.8 ENSMUSP00000058221.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055117.8Link to Ensembl Protein Viewer:ENSMUSP00000058221.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000055117Re-query CCDS DB by Protein ID:ENSMUSP00000058221
Original member Current member NCBI NM_146075.2 NP_666187.2 Accepted alive Link to Nucleotide Sequence:NM_146075.2Link to Protein Sequence:NP_666187.2Re-query CCDS DB by Nucleotide ID:NM_146075Re-query CCDS DB by Protein ID:NP_666187Link to BLAST:NP_666187.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666187.2 511 Q6DVA0 511 100% 0 0

Chromosomal Locations for CCDS 50043.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 27190640 27190790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27192932 27193034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27193103 27193204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27193838 27193983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27195325 27195404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27196136 27196212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27199363 27199438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27201637 27201677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27203659 27204418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1536 nt):
ATGGCCGGCCTGTCGGACCTGGAGTTGCGGCGAGAGCTGCAGGCCCTGGGCTTCCAGCCAGGCCCCATCA
CCGACACCACGCGGAACGTCTACCGCAACAAGCTGCGCCGCCTGCGGGGCGAGGCCCGGCTGCGCGACGA
CGAGCGGCTGCGGGAGGACGCCGGGCCGCGGGAGGACGCCGGGCCGCGGGGCCCCGAGCGGCAGCGGGAG
GAGGCCCGGCTACGCGAGGAAGCGCCGCTGCGCGCGCGGCCCGCCGCCAGCGTCCTGCGCTCGGAGCCCT
GGCCGCTGTCGCCTTCCCCGCCGGCGCCTAGCGCGGCCTCCGACGCCTCGGGGCCGTACGGCAACTTCGG
GGCCTCCGCCTCTCCCTGGGCCGCGAGCCGCGGCCTCTCCTACCCGCCCCACGCCGGGCCCGGGCCGCTG
CGACGCCGCGCCTCGGTCCGGGGCAGCTCGGAGGATGACGAGGATACACGAACGCCGGACAGGCACGCCC
CGGGCCGGGGCCGCCACTGGTGGGCCCCGCCGTCGGCCTCTGCGCGGCCGCACTCGGCGCTCCTCGGCGC
CGACGCTCGCCCCGGCCTGAAGGGCTCGCGCACCGGCTCGGCGGGCGCCGGGCGGACCCGACCCGAGGTG
GGCCGGTGGCTGGAGCGCTGCCTGTCTCGGCTCCTGCTCTGGGCCAGCCTGGGGCTGCTGCTCGGCTTCT
TGGCCATCCTGTGGGTGAAGATGGGCAAGCCCTCGGCGCCGCAGGAGGCGGAGGACAACATGAAATTGTT
GCCGGTCGACTGTGAGAGAAAAACAGATGAGTTCTGCCAGGCCAAGCAGAAGGCGGCCCTGTTGGAGCTG
CTGCACGAACTGTACAACTTCCTGGCCATCCAGGCAGGTAATTTTGAATGTGGCAACCCGGAGAAGCTGA
AGAGCAAGTGCATCCCAGTCCTGGAGGCGCAGGAGTACATAGCTAATGTGACCAGCAGTCCCTCTTCGAG
GTTTAAGGCTGCGCTGACCTGGATCCTGAGCAGCAACAAGGACGTGGGCATCTGGCTGAAAGGGGAAGAC
CCATCTGAGCTGGCGACTACAGTGGACAAAGTGGTCTGCCTGGAGTCCGCCCGGCCCCGGATGGGCATAG
GCTGCCGCCTCAGCCGCGCCCTGCTCACCGCTGTCACCCACGTGCTCATCTTCTTCTGGTGCCTGGCCTT
CCTGTGGGGGCTGCTGATCCTCCTGAAGTACCGCTGGCGGAAGCTGGAGGAGGAGGAGCAGGCCATGTAT
GAGATGGTGAAGAAGATCATAGATGTGGTTCAGGACCACTATGTGGACTGGGAACAGGACATGGAGCGCT
ACCCCTACGTGGGCATCCTCCACGTGCGGGACAGTCTAATCCCCCCACAGAGCCGGCGGCGCATGAAGCG
AGTATGGGACCGTGCTGTGGAATTCCTGGCTTCCAATGAATCTCGGATCCAGACTGAGTCCCACCGAGTG
GCCGGGGAGGACATGCTGGTGTGGAGATGGACTAAGCCTTCCTCTTTCTCTGATTCAGAGCGATAG

Translation (511 aa):
MAGLSDLELRRELQALGFQPGPITDTTRNVYRNKLRRLRGEARLRDDERLREDAGPREDAGPRGPERQRE
EARLREEAPLRARPAASVLRSEPWPLSPSPPAPSAASDASGPYGNFGASASPWAASRGLSYPPHAGPGPL
RRRASVRGSSEDDEDTRTPDRHAPGRGRHWWAPPSASARPHSALLGADARPGLKGSRTGSAGAGRTRPEV
GRWLERCLSRLLLWASLGLLLGFLAILWVKMGKPSAPQEAEDNMKLLPVDCERKTDEFCQAKQKAALLEL
LHELYNFLAIQAGNFECGNPEKLKSKCIPVLEAQEYIANVTSSPSSRFKAALTWILSSNKDVGIWLKGED
PSELATTVDKVVCLESARPRMGIGCRLSRALLTAVTHVLIFFWCLAFLWGLLILLKYRWRKLEEEEQAMY
EMVKKIIDVVQDHYVDWEQDMERYPYVGILHVRDSLIPPQSRRRMKRVWDRAVEFLASNESRIQTESHRV
AGEDMLVWRWTKPSSFSDSER


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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