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Report for CCDS28713.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28713.1 Public Mus musculus 17 Abcf1 23 108 98 CCDS HistoryNCBI Gene:224742Re-query CCDS DB by CCDS ID:28713.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28713.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043757.14 ENSMUSP00000036881.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043757.14Link to Ensembl Protein Viewer:ENSMUSP00000036881.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000043757Re-query CCDS DB by Protein ID:ENSMUSP00000036881
Original member Current member NCBI NM_013854.1 NP_038882.1 Accepted alive Link to Nucleotide Sequence:NM_013854.1Link to Protein Sequence:NP_038882.1Re-query CCDS DB by Nucleotide ID:NM_013854Re-query CCDS DB by Protein ID:NP_038882Link to BLAST:NP_038882.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038882.1 837 Q6P542 837 100% 0 0

Chromosomal Locations for CCDS 28713.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35957423 35957589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35957679 35957751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35957842 35957906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35958073 35958241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35958325 35958357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35959069 35959139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35959229 35959303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35959436 35959720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35959868 35959992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35960114 35960197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35960581 35960729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35960815 35960954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35961043 35961229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35961701 35961823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35961986 35962084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35963126 35963236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35963321 35963392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35963569 35963679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35963758 35963795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35963917 35964046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35964254 35964340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35965077 35965123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35969646 35969718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2514 nt):
ATGCCGAAGGGTCCCAAGCAACAGCCGCCCGAGCCCGAGTGGATCGGGGACGGCGAGGGCACGAGCCCCG
CGGACAAAGTAGTGAAGAAAGGAAAAAAGGACAAGAAGACCAAAAAGACGTTCTTTGAAGAGCTGGCAGT
AGAGGACAAACAAGCTGGGGAAGAGGAAAAATTGCAGAAGGAGAAGGAGCAGCAACAGCAACAGCAGCAA
CAGAAGAAAAAGCGAGACACCAGGAAAGGCCGTCGGAAAAAGGATGTGGACGATGATAGTGATGAGAGAG
TGCTCATGGAGCGACTTAAGCAACTGTCTGTGCCAGCCAGTGATGAGGAAGATGAGGTGCCTGCCCCCAT
ACCCCGAGGACGGAAGAAGGCCAAGGGTGGAAATGTTTTTGAAGCCCTGATTCAGGATGACAGTGAGGAG
GAGGAAGAGGAGGAAGAAAACCGTGTTCTCAAGCCCGCCAAGCCAGAGAAGAATCGCATCAATAAAGCCG
TGGCTGAGGAACCTCCTGGGCTCAGGAGTAAAAAGGGAAAGGAGGAGAAATCAAAAGGGAAAGCCAAGAG
TAAACCTGCTGCTGCAGACAGTGAAGGGGAAGAGGAGGAGGAGGACACAGCTAAAGAAAAGGAGCCTCCT
CAGCAAGGGAAGGACAGAGACAAAAAGGAGGCTGAGCAGGGCTCAGGGGAAGAGAAGGAAGAGAAAGAAG
GGGACTTGAAGGCAAACGATCCCTATGCCAACCTTAGCAAAAAGGAAAAGAAAAAGCTAAAGAAACAGAT
GGATTATGAACGACAGGTGGAGTCATTGAAAGCAGCTAATGCTGCAGAAAACGACTTCTCTGTGTCCCAG
GCAGAGGTGTCTTCCCGCCAGGCAATGTTAGAAAATGCATCTGACATTAAGTTGGAAAAGTTCAGCATCT
CCGCCCACGGCAAGGAGCTATTCGTCAATGCTGACCTGTACATAGTAGCCGGCCGCCGCTATGGGCTGGT
GGGACCCAACGGCAAAGGCAAAACCACGCTTCTGAAGCACATTGCCAACCGTGCCCTGAGCATCCCCCCT
AACATTGACGTGCTGCTGTGCGAGCAGGAGGTGGTGGCTGATGAAACACCAGCCGTGCAAGCTGTCCTTC
GAGCAGATACCAAGCGACTGAGGTTGCTAGAGGAGGAGAGACGGCTTCAGGGACAGCTGGAGCAGGGGGA
TGACACTGCTGCTGAGAAACTAGAAAAGGTGTATGAGGAACTGCGAGCTACCGGGGCAGCAGCTGCAGAG
GCCAAGGCACGGCGGATCCTGGCTGGCTTGGGCTTCGACCCTGAGATGCAGAATCGGCCCACACAGAAGT
TCTCTGGGGGTTGGAGAATGCGTGTCTCCCTGGCCAGGGCACTGTTCATGGAGCCAACGCTGCTGATGTT
GGATGAGCCCACTAACCACCTGGACCTCAACGCCGTCATCTGGCTCAATAACTACCTTCAGGGCTGGAGG
AAGACGTTGCTGATTGTCTCCCACGACCAGGGCTTTCTGGATGACGTTTGCACTGATATCATCCACCTGG
ACACCCAGCGGCTCCATTACTACAGGGGCAATTACATGACCTTCAAGAAGATGTACCAGCAGAAGCAGAA
AGAGCTGCTAAAGCAGTACGAGAAGCAGGAGAAGAAACTGAAGGAGCTGAAGGCTGGGGGCAAGTCCACC
AAGCAAGCGGAAAAGCAAACAAAGGAAGTCCTGACTCGAAAACAGCAGAAGTGCCGACGGAAAAACCAGG
ATGAAGAGTCTCAGGAGCCCCCTGAGCTCCTGAAGCGTCCCAAGGAGTACACCGTGCGCTTCACCTTCCC
AGACCCCCCGCCTCTCAGCCCACCTGTGCTGGGCCTGCACGGTGTGACGTTTGGCTACGAGGGGCAGAAG
CCACTCTTTAAGAATCTAGATTTCGGCATCGACATGGACTCCCGGATTTGCATCGTGGGTCCCAATGGTG
TGGGGAAGAGCACACTACTCCTGCTGCTGACTGGCAAGCTGACACCGACCAACGGGGAGATGAGGAAGAA
CCATCGGCTGAAAATCGGCTTCTTTAACCAGCAGTACGCAGAGCAGCTGCACATGGAGGAGACGCCCACT
GAGTACCTGCAGCGGAGCTTCAATCTGCCCTACCAGGATGCCCGGAAGTGCTTGGGCCGCTTTGGCCTGG
AGAGCCACGCCCACACCATCCAGATCTGCAAACTCTCCGGTGGGCAGAAAGCCCGAGTTGTGTTTGCGGA
GCTGGCCTGTCGGGAGCCTGATGTCCTCATCTTGGATGAACCAACCAATAACTTGGACATAGAGTCCATC
GATGCCCTGGGGGAGGCCATCAACGACTACAAGGGGGCTGTGATCGTTGTCAGCCACGATGCGCGCCTCA
TCACAGAAACCAACTGCCAGTTGTGGGTGGTGGAGGAGCAGGGTGTCAGTCAGATCGACGGCGACTTTGA
TGACTACAAGCGAGAGGTGTTGGAGGCCCTGGGTGAGGTCATGGTCAACCGTCCTCGGGATTGA

Translation (837 aa):
MPKGPKQQPPEPEWIGDGEGTSPADKVVKKGKKDKKTKKTFFEELAVEDKQAGEEEKLQKEKEQQQQQQQ
QKKKRDTRKGRRKKDVDDDSDERVLMERLKQLSVPASDEEDEVPAPIPRGRKKAKGGNVFEALIQDDSEE
EEEEEENRVLKPAKPEKNRINKAVAEEPPGLRSKKGKEEKSKGKAKSKPAAADSEGEEEEEDTAKEKEPP
QQGKDRDKKEAEQGSGEEKEEKEGDLKANDPYANLSKKEKKKLKKQMDYERQVESLKAANAAENDFSVSQ
AEVSSRQAMLENASDIKLEKFSISAHGKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRALSIPP
NIDVLLCEQEVVADETPAVQAVLRADTKRLRLLEEERRLQGQLEQGDDTAAEKLEKVYEELRATGAAAAE
AKARRILAGLGFDPEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWR
KTLLIVSHDQGFLDDVCTDIIHLDTQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKAGGKST
KQAEKQTKEVLTRKQQKCRRKNQDEESQEPPELLKRPKEYTVRFTFPDPPPLSPPVLGLHGVTFGYEGQK
PLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTNGEMRKNHRLKIGFFNQQYAEQLHMEETPT
EYLQRSFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESI
DALGEAINDYKGAVIVVSHDARLITETNCQLWVVEEQGVSQIDGDFDDYKREVLEALGEVMVNRPRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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