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Report for CCDS37639.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37639.2 Reviewed, update pending Mus musculus 17 Rrp36 23 108 98 CCDS HistoryNCBI Gene:224823Re-query CCDS DB by CCDS ID:37639.2See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 37639.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000233136.1 ENSMUSP00000156646.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233136.1Link to Ensembl Protein Viewer:ENSMUSP00000156646.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233136Re-query CCDS DB by Protein ID:ENSMUSP00000156646
Original member Current member NCBI NM_144857.2 NP_659106.2 Pending alive Link to Nucleotide Sequence:NM_144857.2Link to Protein Sequence:NP_659106.2Re-query CCDS DB by Nucleotide ID:NM_144857Re-query CCDS DB by Protein ID:NP_659106Link to BLAST:NP_659106.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659106.2 244 Q3UFY0 244 98.3607% 0 4

Chromosomal Locations for CCDS 37639.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 46667950 46668086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46669905 46670022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46670111 46670185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46672336 46672440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46672525 46672591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46672706 46672847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46674197 46674287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGCGGAAGGCTGGTTCTAGGGCTAGGGCTGAGGCCGAAGGTCCTCACCGTGCTATGGAGGGCGGGGAGG
TGACTGGCGACCGGCTGAAGGCAGACACATCTGACATGTCATTTGAGGAGCTGTTGAGATTACAGGGCCA
AGGGAGACCCAAGGCACACAAACAATTGGTAGCTGGAAACAGCACTAGAACGCGAAGCCCCCAACAACCC
GTGTGTGTCGCCGATAAGCACCGGCCTCTGGAAATGTCAGCTAAAGTCCGGGTGCCATTCTTACGTCAGG
TGGTGCCCATCAGTAAAAAGGTCGCCCGAGACCCCCGCTTTGATGATCTGTCAGGGGACTATAACCCTGA
AGTGTTTGACAAAACTTACCAGTTCCTGAATGATATCCGAGCCAAAGAGAAGCAGCTTGTGAAAAAGCAG
TTGAAGAAGCACCGCTCAGGGGAGGAGCATGACAAACTGCAACAGCTGCTTCAGCGGATGGAGCAACAAG
AGATGGCACAGCAGGAACGCAAGCAGCAGCAGGAGCTGCGCTTGGCCTTGAAGCAGGAGCGCCGGGCTCA
GGCACAGCAGGGCCATCGGCCATACTTCCTGAAGAAATCTGAGCAGCGGCAGCTGGCCTTGGCTGAGAAG
TTCAAGGAGCTGAGACGCAGCAAGAAGCTGGAGAGTTTCCTGAGTCGAAAGAGGCGGCGGAACGCAGGCA
AGGACAGGAGGCACCTCCCGCTGAGCAAGGAGTAG

Translation (244 aa):
MRKAGSRARAEAEGPHRAMEGGEVTGDRLKADTSDMSFEELLRLQGQGRPKAHKQLVAGNSTRTRSPQQP
VCVADKHRPLEMSAKVRVPFLRQVVPISKKVARDPRFDDLSGDYNPEVFDKTYQFLNDIRAKEKQLVKKQ
LKKHRSGEEHDKLQQLLQRMEQQEMAQQERKQQQELRLALKQERRAQAQQGHRPYFLKKSEQRQLALAEK
FKELRRSKKLESFLSRKRRRNAGKDRRHLPLSKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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