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Report for CCDS50729.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50729.1 Public Mus musculus 2 Plcb1 23 108 98 CCDS HistoryNCBI Gene:18795Re-query CCDS DB by CCDS ID:50729.1Re-query CCDS DB by GeneID:18795See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50729.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110116.7 ENSMUSP00000105743.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110116.7Link to Ensembl Protein Viewer:ENSMUSP00000105743.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110116Re-query CCDS DB by Protein ID:ENSMUSP00000105743
Original member Current member NCBI NM_001145830.1 NP_001139302.1 Accepted alive Link to Nucleotide Sequence:NM_001145830.1Link to Protein Sequence:NP_001139302.1Re-query CCDS DB by Nucleotide ID:NM_001145830Re-query CCDS DB by Protein ID:NP_001139302Link to BLAST:NP_001139302.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139302.1 1216 Q9Z1B3-1 1216 100% 0 0

Chromosomal Locations for CCDS 50729.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 134786533 134786631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 134813601 134813678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 134988124 134988192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135220718 135220855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135249971 135250050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135251733 135251786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135252775 135252850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135260499 135260599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135262108 135262274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135294849 135294995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135310921 135311078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135317786 135317868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135322610 135322694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135325623 135325800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135330300 135330367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135333348 135333444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135335428 135335512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135337437 135337561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135340660 135340814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135344158 135344322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135345023 135345122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135346297 135346401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135347367 135347476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135359654 135359786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135362384 135362437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135364768 135364987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135370421 135370601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135386094 135386170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135386273 135386362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135387136 135387193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135387798 135387884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135472053 135472280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3651 nt):
ATGGCTGGGGCTCAGCCCGGAGTGCACGCCTTGCAACTCAAGCCCGTGTGCGTGTCCGACAGCCTCAAGA
AGGGCACCAAATTCGTCAAGTGGGATGATGACTCCACTATTGTTACTCCAATTATTTTGAGGACTGATCC
TCAGGGATTTTTCTTTTACTGGACAGACCAGAATAAGGAGACGGAGCTGTTAGATCTCAGCCTTGTCAAG
GATGCCAGGTGTGGGAAGCACGCCAAAGCTCCCAAGGACCCCAAGTTGCGTGAACTTCTGGATGTTGGGA
ACATCGGACACTTGGAACAGCGCATGATAACTGTGGTGTATGGACCAGACCTGGTGAACATTTCCCACTT
GAATCTTGTGGCTTTTCAAGAGGAAGTAGCCAAGGAATGGACAAATGAGGTTTTCAGCTTGGCAACAAAC
CTGCTGGCTCAGAACATGTCCAGGGACGCATTTCTGGAGAAAGCATATACTAAGCTCAAGCTCCAGGTCA
CCCCAGAAGGCCGCATTCCTCTTAAAAACATCTATCGATTGTTCTCAGCAGACCGGAAGCGCGTTGAAAC
TGCACTAGAGGCTTGTAGTCTTCCATCTTCGAGGAATGACTCCATTCCCCAAGAGGACTTCACTCCAGAT
GTATACAGAGTTTTCCTGAACAATCTCTGTCCCCGACCTGAAATTGATAACATCTTTTCTGAATTTGGTG
CCAAAAGCAAACCGTACCTGACGGTTGATCAGATGATGGATTTTATCAACCTTAAGCAGAGAGATCCCCG
GCTCAATGAAATCCTTTACCCACCTCTGAAGCAGGAGCAGGTCCAAGTGTTGATTGAGAAATATGAGCCC
AACAGCAGCCTCGCCAAGAAAGGGCAGATGTCAGTGGATGGATTCATGCGCTACCTGAGCGGAGAAGAAA
ATGGAGTCGTTTCACCTGAGAAACTGGATTTGAACGAAGACATGTCTCAGCCCCTGTCTCACTATTTCAT
CAATTCCTCGCACAACACCTACCTCACAGCTGGCCAGTTGGCTGGGAACTCGTCTGTAGAGATGTATCGC
CAGGTGCTTCTGTCTGGATGTCGCTGTGTGGAGCTGGACTGCTGGAAGGGAAGGACCGCTGAGGAAGAGC
CTGTCATTACCCATGGATTCACCATGACAACAGAAATATCCTTCAAGGAAGTCATAGAAGCCATCGCAGA
GTGTGCGTTCAAGACGTCTCCTTTCCCCATCCTCCTTTCCTTTGAGAACCACGTGGATTCCCCGAAGCAA
CAAGCCAAGATGGCCGAGTATTGCCGATTAATCTTTGGTGATGCCCTCCTGATGGAACCACTGGAAAAAT
ACCCACTGGAATCTGGGGTACCTCTTCCAAGCCCTATGGATTTAATGTATAAAATCTTGGTGAAAAACAA
GAAGAAGTCGCACAAGTCGTCAGAGGGAAGTGGTAAGAAGAAGCTTTCAGAGCAAGCTTCCAACACCTAC
AGCGACTCCTCCAGTGTGTTCGAGCCTTCGTCTCCAGGAGCTGGGGAAGCAGATACGGAGAGTGATGACG
ATGACGACGACGATGACTGTAAAAAGTCTTCCATGGATGAGGGGACAGCTGGCAGCGAAGCCATGGCCAC
AGAAGAGATGTCTAACCTGGTGAACTATATTCAGCCTGTCAAGTTTGAGTCCTTTGAAATTTCAAAAAAA
AGAAATAAAAGCTTTGAAATGTCTTCCTTCGTGGAAACCAAAGGACTTGAACAACTTACAAAGTCTCCGG
TGGAATTTGTAGAATACAACAAGATGCAACTTAGCAGGATATATCCCAAGGGAACACGTGTGGATTCATC
CAACTACATGCCTCAACTCTTCTGGAATGCTGGCTGTCAGATGGTGGCGCTCAACTTCCAGACAGTGGAT
CTAGCTATGCAGATAAACATGGGCATGTATGAGTACAATGGGAAGAGCGGCTATAGGCTGAAGCCAGAGT
TCATGAGGAGGCCGGACAAGCATTTTGATCCATTTACTGAAGGAATCGTAGATGGGATAGTGGCCAACAC
TCTATCTGTTAAGATTATTTCAGGTCAGTTCCTCTCTGATAAGAAAGTTGGGACTTATGTGGAAGTGGAT
ATGTTTGGCTTGCCTGTGGACACAAGGAGGAAGGCATTTAAAACCAAGACATCCCAAGGAAATGCTGTAA
ACCCTGTCTGGGAAGAAGAACCTATTGTATTCAAAAAGGTAGTTCTACCTTCTCTGGCCTGTTTGAGGAT
AGCAGCATATGAAGAGGGAGGCAAATTTATTGGCCACCGGATATTGCCTGTGCAGGCTATTCGGCCAGGC
TATCACTACATCTGCCTGCGGAATGAGAGGAACCAGCCCCTGACGCTGCCAGCTGTCTTTGTCTACATAG
AAGTCAAAGATTATGTGCCAGACACGTATGCAGATGTAATCGAAGCTCTATCAAACCCAATCCGATATGT
CAATCTGATGGAACAGAGAGCTAAGCAGCTGGCTGCGTTGACCCTGGAGGATGAAGAGGAAGTAAAGAAG
GAGGCTGACCCTGGAGAAACATCTTCCGAGGCTCCAAGCGAAACCAGGACAACGCCAGCAGAGAATGGGG
TGAATCACACCGCATCCCTTGCACCCAAGCCGCCTTCCCAGGCTCCACACAGCCAGCCTGCTCCAGGGTC
TGTGAAGGCACCTGCCAAAACAGAAGATCTGATCCAGAGCGTGTTAACAGAAGTAGAGGCGCAAACCATC
GAAGAGCTCAAGCAACAGAAATCGTTCGTGAAACTTCAAAAGAAACACTACAAAGAAATGAAAGACCTGG
TGAAGAGACACCACAAGAAAACCACGGAGCTCATTAAGGAGCACACGACCAAGTACAACGAGATTCAGAA
TGACTACCTGAGAAGGAGGGCAGCCTTGGAGAAGTCCGCCAAAAAGGACAGCAAGAAGAAATCTGAACCC
AGCAGCCCTGACCACGGCTCATCAGCCATTGAGCAAGACCTCGCTGCCCTGGATGCAGAAATGACTCAGA
AGTTGATAGACTTGAAAGACAAGCAACAACAGCAGCTGCTTAATCTTCGGCAAGAGCAGTATTACAGCGA
GAAGTACCAAAAGCGAGAACACATTAAACTGCTTATTCAGAAGTTGACAGATGTTGCAGAAGAGTGTCAG
AACAATCAGTTAAAGAAGCTGAAGGAAATCTGCGAGAAAGAGAAGAAGGAATTAAAGAAGAAAATGGATA
AGAAGAGGCAAGAGAAGATAACAGAAGCCAAGTCCAAAGACAAAAGCCAGATGGAAGAGGAGAAGACAGA
GATGATCCGATCGTACATCCAGGAGGTGGTTCAGTACATCAAGAGGTTAGAGGAAGCACAAAGTAAAAGA
CAAGAAAAACTCGTGGAGAAACACAATGAGATCCGCCAGCAGATCCTCGATGAGAAGCCCAAGCTGCAGA
CGGAGCTGGAGCAAGAATACCAAGACAAGTTCAAAAGGCTGCCCCTGGAGATTCTGGAGTTTGTACAGGA
AGCCATGAAAGGGAAGATCAGCGAGGACAGCAATCACGGCTCTGCCCCTCCCTCTCTGGCCTCAGATGCT
GCAAAGGTGAACCTCAAGTCTCCCTCCAGTGAGGAGATAGAAAGAGAGAACCCAGGAAGAGAGTTTGATA
CTCCTCTGTGA

Translation (1216 aa):
MAGAQPGVHALQLKPVCVSDSLKKGTKFVKWDDDSTIVTPIILRTDPQGFFFYWTDQNKETELLDLSLVK
DARCGKHAKAPKDPKLRELLDVGNIGHLEQRMITVVYGPDLVNISHLNLVAFQEEVAKEWTNEVFSLATN
LLAQNMSRDAFLEKAYTKLKLQVTPEGRIPLKNIYRLFSADRKRVETALEACSLPSSRNDSIPQEDFTPD
VYRVFLNNLCPRPEIDNIFSEFGAKSKPYLTVDQMMDFINLKQRDPRLNEILYPPLKQEQVQVLIEKYEP
NSSLAKKGQMSVDGFMRYLSGEENGVVSPEKLDLNEDMSQPLSHYFINSSHNTYLTAGQLAGNSSVEMYR
QVLLSGCRCVELDCWKGRTAEEEPVITHGFTMTTEISFKEVIEAIAECAFKTSPFPILLSFENHVDSPKQ
QAKMAEYCRLIFGDALLMEPLEKYPLESGVPLPSPMDLMYKILVKNKKKSHKSSEGSGKKKLSEQASNTY
SDSSSVFEPSSPGAGEADTESDDDDDDDDCKKSSMDEGTAGSEAMATEEMSNLVNYIQPVKFESFEISKK
RNKSFEMSSFVETKGLEQLTKSPVEFVEYNKMQLSRIYPKGTRVDSSNYMPQLFWNAGCQMVALNFQTVD
LAMQINMGMYEYNGKSGYRLKPEFMRRPDKHFDPFTEGIVDGIVANTLSVKIISGQFLSDKKVGTYVEVD
MFGLPVDTRRKAFKTKTSQGNAVNPVWEEEPIVFKKVVLPSLACLRIAAYEEGGKFIGHRILPVQAIRPG
YHYICLRNERNQPLTLPAVFVYIEVKDYVPDTYADVIEALSNPIRYVNLMEQRAKQLAALTLEDEEEVKK
EADPGETSSEAPSETRTTPAENGVNHTASLAPKPPSQAPHSQPAPGSVKAPAKTEDLIQSVLTEVEAQTI
EELKQQKSFVKLQKKHYKEMKDLVKRHHKKTTELIKEHTTKYNEIQNDYLRRRAALEKSAKKDSKKKSEP
SSPDHGSSAIEQDLAALDAEMTQKLIDLKDKQQQQLLNLRQEQYYSEKYQKREHIKLLIQKLTDVAEECQ
NNQLKKLKEICEKEKKELKKKMDKKRQEKITEAKSKDKSQMEEEKTEMIRSYIQEVVQYIKRLEEAQSKR
QEKLVEKHNEIRQQILDEKPKLQTELEQEYQDKFKRLPLEILEFVQEAMKGKISEDSNHGSAPPSLASDA
AKVNLKSPSSEEIERENPGREFDTPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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