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Report for CCDS37924.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37924.1 Public Mus musculus 19 Patl1 23 108 98 CCDS HistoryNCBI Gene:225929Re-query CCDS DB by CCDS ID:37924.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37924.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061618.8 ENSMUSP00000060398.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061618.8Link to Ensembl Protein Viewer:ENSMUSP00000060398.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000061618Re-query CCDS DB by Protein ID:ENSMUSP00000060398
Original member NCBI NM_172635.3 NP_766223.2 Updated not alive Link to Nucleotide Sequence:NM_172635.3Link to Protein Sequence:NP_766223.2Re-query CCDS DB by Nucleotide ID:NM_172635Re-query CCDS DB by Protein ID:NP_766223
Current member NCBI NM_172635.4 NP_766223.2 Accepted alive Link to Nucleotide Sequence:NM_172635.4Link to Protein Sequence:NP_766223.2Re-query CCDS DB by Nucleotide ID:NM_172635Re-query CCDS DB by Protein ID:NP_766223Link to BLAST:NP_766223.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766223.2 770 Q3TC46 770 100% 0 0

Chromosomal Locations for CCDS 37924.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11912563 11912577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11914348 11914459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11920178 11920395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11920805 11920885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11921369 11921563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11922467 11922568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11923387 11923476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11923801 11924018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11925137 11925226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11929875 11930055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11931533 11931656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11932138 11932235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11933680 11933739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11935679 11935827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11937220 11937379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11939684 11939839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11942629 11942720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11942825 11942974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11943331 11943352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2313 nt):
ATGTTCCGCTACGAGTCTTTGGAGGATTGTCCTCTAGATGAAGATGAAGATGCATTTCAAGGCCTGGGAG
AAGAAGATGAAGAAATTGATCAATTTAATGATGATACCTTTGGGTCAGGTGCAGTTGATGATGATTGGCA
GGAAGCACATGAGCGCCTGGCTGAGTTGGAAGAGAAGCTACCTGTGGCAGCTGATGAACAAACAGGCAAT
GGAGAGAGAGATGAGATGGATTTGTTGGGTGACCATGAGGAGAATCTAGCAGAAAGGCTCAGTAAGATGG
TGATTGAAAATGAGCTAGAAGATCCAGCTATCATGAGGGCAGTACAGACCAGGCCAGTTTTACAACCTCA
ACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGTGGACCACTACTT
GCTCAGGAAATGCCTACAGTGTCTGTATTAGAGTATGCCTTGCCTCAGAGGCCCCTGCAGGGCCCAGAAG
ATGATCGGGACCTTTCTGAGCGAGCTTTACCAAGGCGGTCAACATCACCTATCATTGGAAGTCCTCCTGT
TAGAGCCGTTCCTATAGGCACCCCACCTAAGCAGATGGCTGTTCCCAGCTTCAACCAACAGATCCTGTGT
CCGAAGCCTGTTCATGTTCGGCCCCCAATGCCGCCACGCTATCCTGCTCCCTATGGCGAGAGGATATCTC
CAAACCAGCTCTGCAGTGTCCCGAACTCCTCCCTCCTGGGCCACCCTTTTCCTCCTAATGTTCCTCCTGT
ACTTAGTCCCCTGCAGAGAGCACAGCTTCTTGGGGGAGCACAGCTACAGCCTGGACGAATGTCTCCCAGC
CAGTTTGCACGGGTCCCTGGGTTTGTTGGTAGCCCACTGGCTGCCATGAATCCTAAGTTGCTACAAGGGC
GCGTTGGGCAGATGCTTCCCCCAGCACCAAGCTTCCGTGCCTTCTTTAGTGCTCCACCCCCCGCTACGCC
ACCTCCACAGCAGCATCCCCCTGGCCCAGGACCTCACCTACAAAACCTCAGACCTCAGGCCCCAATGTTT
AGAGCAGACACAACTCACCTTCATCCACAGCACCGGCGCCTGTTGCATCAGAGGCAGCTGCAGAGCAGAA
ATCAGCATCGGAATCTCAATGGTACTGGAGATAGAGGAGGGCACCAGTCCAGTCATCAAGATCATCTCCG
GAAGGATCCATATGCTAATCTAATGTTGCAGCGGGAGAAGGATTGGGTCTCTAAAATACAGATGATGCAG
CTGCAGAGCACTGATCCCTACCTGGATGATTTCTATTACCAGAATTACTTTGAAAAACTGGAGAAATTGT
CAGCTGCTGAGGAAATACAAGGTGATGGCCCTAAGAAGGAGCGTACCAAGCTCATCACCCCTCAGGTGGC
CAAACTGGAGCATGCTTATCAGCCTGTGCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTG
AATAATCCTCGGAAGATGATAGATGCTGTTGTGACATCTCGAAGTGAGGATGATGAAACAAAAGAAAAAC
AAGTTCGGGATAAGAGAAGAAAAACCCTTGTTATAATTGAGAAAACCTATAGTTTACTCCTTGATGTGGA
GGATTATGAAAGGCGCTATCTCCTAAGTCTAGAAGAAGAGCGGCCTGCCCTGATGGATGAAAGAAAGCAC
AAAATATGTAGCATGTATGACAACCTGAGGGGCAAATTGCCTGGACAAGAGAGGCCAAGTGATGACCACT
TTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGCATTCTCCCTTTCCTCTCCACAGA
GCAAGCAGCTGACATTCTCATGGCAACTGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCCCAAGAT
GAGGTGCTGCCATGCTTACTGAGTCCCTTCTCTCTCCTCCTCTATCATCTTCCTTCAGTGACTGTCACCA
GCCTTCTGCAACAGCTAATGAACCTACCTCAGAGTGCAAGTGCACCAGCGCCCTCCAACTCTCACCTCAC
TGCTGTGCTCCAGAACAAGTTTGGCTTGTCACTGCTCCTAATCCTACTAAGCCGTGGAGAAGACCTACAG
AGTTCAGATCCTGCTATAGAATCAACGCAAAATAACCAGTGGACAGAGGTGATGTTCATGGCAACCCGAG
AACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTT
TTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAGCTGGTTCAGGGGATACGG
TAA

Translation (770 aa):
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKLPVAADEQTGN
GERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGSLNSSIWDGSEVLRRIRGPLL
AQEMPTVSVLEYALPQRPLQGPEDDRDLSERALPRRSTSPIIGSPPVRAVPIGTPPKQMAVPSFNQQILC
PKPVHVRPPMPPRYPAPYGERISPNQLCSVPNSSLLGHPFPPNVPPVLSPLQRAQLLGGAQLQPGRMSPS
QFARVPGFVGSPLAAMNPKLLQGRVGQMLPPAPSFRAFFSAPPPATPPPQQHPPGPGPHLQNLRPQAPMF
RADTTHLHPQHRRLLHQRQLQSRNQHRNLNGTGDRGGHQSSHQDHLRKDPYANLMLQREKDWVSKIQMMQ
LQSTDPYLDDFYYQNYFEKLEKLSAAEEIQGDGPKKERTKLITPQVAKLEHAYQPVQFEGSLGKLTVSSV
NNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYERRYLLSLEEERPALMDERKH
KICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARILPFLSTEQAADILMATARNLPFLIKKDAQD
EVLPCLLSPFSLLLYHLPSVTVTSLLQQLMNLPQSASAPAPSNSHLTAVLQNKFGLSLLLILLSRGEDLQ
SSDPAIESTQNNQWTEVMFMATRELLRIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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