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Report for CCDS15620.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15620.1 Public Mus musculus 1 Ppp2r5a 23 108 98 CCDS HistoryNCBI Gene:226849Re-query CCDS DB by CCDS ID:15620.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15620.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067976.8 ENSMUSP00000070726.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067976.8Link to Ensembl Protein Viewer:ENSMUSP00000070726.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000067976Re-query CCDS DB by Protein ID:ENSMUSP00000070726
Original member Current member NCBI NM_144880.4 NP_659129.2 Accepted alive Link to Nucleotide Sequence:NM_144880.4Link to Protein Sequence:NP_659129.2Re-query CCDS DB by Nucleotide ID:NM_144880Re-query CCDS DB by Protein ID:NP_659129Link to BLAST:NP_659129.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659129.2 486 Q6PD03 486 100% 0 0

Chromosomal Locations for CCDS 15620.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 191352977 191353109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191353874 191353975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191354531 191354658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191354742 191354861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191355023 191355073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191356334 191356387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191356887 191356995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191357792 191357851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191358925 191359055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191362249 191362341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191368641 191368742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191372470 191372666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191396236 191396416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1461 nt):
ATGTCGTCGCCGTCGCCGCCCGCACCAGTTGCCTGCGCCGCCATCTCGGCCTCGGAGAAAGTGGACGGCT
TCACCCGGAAATCGGTGCGCAAGGCGCAGAGGCAGAAGCGCTCTCAGGGCTCGTCGCAGTTCCGCAGCCA
GGGCAGCCAGGCGGAGCTGCACCCCCTGCCCCAGCTCAAAGATGCCACTTCAAATGAACAGCAAGAGCTT
TTCTGCCAGAAGCTACAACAGTGCTGTGTACTGTTTGATTTCATGGACTCTGTCTCAGACTTGAAGAGCA
AAGAAATTAAAAGAGCGACGCTGAATGAACTGGTTGAGTATGTTTCAACTAATCGTGGTGTAATTGTTGA
ATCAGCGTATTCTGATATAGTAAAAATGATCAGTGCTAACATCTTCCGGACACTTCCTCCAAGTGATAAT
CCAGATTTTGACCCGGAAGAGGATGAGCCCACACTTGAGGCCTCTTGGCCTCACATACAGTTGGTGTATG
AATTCTTCTTGAGATTCTTGGAGAGTCCTGATTTCCAGCCCAGCATTGCAAAGCGATACATTGATCAGAA
GTTTGTCCAACAGCTCCTGGAGCTTTTTGATAGTGAAGATCCACGGGAGCGCGACTTCCTGAAGACCGTC
CTGCATCGGATTTACGGCAAGTTCCTTGGCCTGAGAGCGTTCATCAGAAAGCAAATTAACAACATTTTCC
TCAGGTTTATATATGAAACGGAACATTTCAATGGTGTGGCTGAGCTCCTGGAAATATTGGGAAGTATCAT
CAATGGCTTTGCATTGCCACTGAAAGCAGAGCATAAGCAGTTTCTAATGAAGGTTCTTATTCCTATGCAT
ACTGCAAAAGGATTGGCCTTGTTTCACGCACAGCTGGCGTACTGTGTTGTGCAGTTCCTGGAGAAAGACA
CAACGCTGACAGAGCCGGTGATCAGAGGACTGCTGAAATTTTGGCCAAAAACATGCAGTCAGAAAGAGGT
GATGTTTTTAGGAGAAATTGAAGAGATCTTAGATGTCATTGAACCAACACAATTCAAAAAAATTGAAGAG
CCGCTTTTTAAGCAGATATCCAAGTGCGTCTCCAGCTCTCATTTCCAGGTTGCAGAAAGAGCACTGTACT
TCTGGAATAATGAATATATTCTTAGTTTGATTGAAGAGAATATTGATAAAATCCTGCCAATCATGTTTGC
CAGCTTGTATAAAATTTCCAAAGAACACTGGAATCAGACTATTGTAGCACTGGTGTACAATGTGCTGAAA
ACCCTCATGGAGATGAACGGCAAGCTTTTTGACGACCTTACTAGTTCCTACAAAGCCGAAAGACAGAGAG
AGAAGAAGAAAGAACTGGAACGGGAAGAGTTGTGGAAAAAACTAGAGGAGCTGCAGCTGAAGAAGGCTCT
AGAGAAACAGAACAATGCTTACAACATGCACAGTATTCGCAGCAGTACCAGTGCCAAATAA

Translation (486 aa):
MSSPSPPAPVACAAISASEKVDGFTRKSVRKAQRQKRSQGSSQFRSQGSQAELHPLPQLKDATSNEQQEL
FCQKLQQCCVLFDFMDSVSDLKSKEIKRATLNELVEYVSTNRGVIVESAYSDIVKMISANIFRTLPPSDN
PDFDPEEDEPTLEASWPHIQLVYEFFLRFLESPDFQPSIAKRYIDQKFVQQLLELFDSEDPRERDFLKTV
LHRIYGKFLGLRAFIRKQINNIFLRFIYETEHFNGVAELLEILGSIINGFALPLKAEHKQFLMKVLIPMH
TAKGLALFHAQLAYCVVQFLEKDTTLTEPVIRGLLKFWPKTCSQKEVMFLGEIEEILDVIEPTQFKKIEE
PLFKQISKCVSSSHFQVAERALYFWNNEYILSLIEENIDKILPIMFASLYKISKEHWNQTIVALVYNVLK
TLMEMNGKLFDDLTSSYKAERQREKKKELEREELWKKLEELQLKKALEKQNNAYNMHSIRSSTSAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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