NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37108.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37108.1 Public Mus musculus 15 Zfp41 23 108 98 CCDS HistoryNCBI Gene:22701Re-query CCDS DB by CCDS ID:37108.1See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 37108.1
This CCDS ID represents the protein described in PMID: 1397691. This protein is encoded by two alternate splice variants supported by BC053927.1 and AK030420.1. It should be noted this transcript is predicted to undergo nonsense-mediated mRNA decay (NMD). However, the protein is represented because it was detected endogenously in PMID: 1397691. It is likely that the majority of transcripts representing this variant will undergo NMD, while some low level of NMD escape may allow for the expression of this protein.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 37108.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054555.9 ENSMUSP00000056510.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054555.9Link to Ensembl Protein Viewer:ENSMUSP00000056510.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000054555Re-query CCDS DB by Protein ID:ENSMUSP00000056510
Original member Current member EBI ENSMUST00000161785.7 ENSMUSP00000124626.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161785.7Link to Ensembl Protein Viewer:ENSMUSP00000124626.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161785Re-query CCDS DB by Protein ID:ENSMUSP00000124626
Original member NCBI NM_001044718.2 NP_001038183.1 Updated not alive Link to Nucleotide Sequence:NM_001044718.2Link to Protein Sequence:NP_001038183.1Re-query CCDS DB by Nucleotide ID:NM_001044718Re-query CCDS DB by Protein ID:NP_001038183
Current member NCBI NM_001044718.3 NP_001038183.1 Accepted alive Link to Nucleotide Sequence:NM_001044718.3Link to Protein Sequence:NP_001038183.1Re-query CCDS DB by Nucleotide ID:NM_001044718Re-query CCDS DB by Protein ID:NP_001038183Link to BLAST:NP_001038183.1
Original member NCBI NM_011759.3 NP_035889.1 Updated not alive Link to Nucleotide Sequence:NM_011759.3Link to Protein Sequence:NP_035889.1Re-query CCDS DB by Nucleotide ID:NM_011759Re-query CCDS DB by Protein ID:NP_035889
Current member NCBI NM_011759.4 NP_035889.1 Accepted alive Link to Nucleotide Sequence:NM_011759.4Link to Protein Sequence:NP_035889.1Re-query CCDS DB by Nucleotide ID:NM_011759Re-query CCDS DB by Protein ID:NP_035889Link to BLAST:NP_035889.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001038183.1 198 Q02526 198 100% 0 0
NP_035889.1 198 Q02526 198 100% 0 0

Chromosomal Locations for CCDS 37108.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 75618201 75618797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGGAAAAGCCTGCAACTAGGAAAAAGAAGAGTCAGGCCCCAAAGGAGGAGGCAGGTGCGCAAAAGGCCA
CTGTCAAGGGAGAGAAAACATCAAAGGGGAAAAAGGCAACCAAGAAGCCAAGAAAGCCCCGCAGACCCCG
AAAAGAACCTGTCCTGAGCCCCGAGGACGAAGCACATATCTTTGATGCCTTCGATGCCTCGTTTAAAGAT
GACTTTGAGGGTGTCCCCGTGTTTGTCCCTTTTCAGAGGAAGAAGCCCTATGAGTGTGGTGAATGTGGAC
GGATCTTTAAACACAAGACAGATCACATTCGCCACCAGAGAGTTCACACTGGAGAGAAGCCCTTTAAGTG
TGACCAGTGTGGGAAGACCTTCAGGCACAGCTCAGATGTCACCAAACATCAAAGAATTCACACCGGTGAG
AAGCCCTTTAAATGTGGGGAGTGTGGAAAAGCCTTCAACTGTGGTTCTAACCTTCTAAAACACCAGAAAA
CGCACACTGGAGAGAAACCTTATGGCTGTGAGGAGTGTGGAAAATCCTTCGCCTACAGCTCCTGCCTCAT
CCGGCATCGGAAGCGTCATCCGAGGAAGAAGCACTGA

Translation (198 aa):
MEKPATRKKKSQAPKEEAGAQKATVKGEKTSKGKKATKKPRKPRRPRKEPVLSPEDEAHIFDAFDASFKD
DFEGVPVFVPFQRKKPYECGECGRIFKHKTDHIRHQRVHTGEKPFKCDQCGKTFRHSSDVTKHQRIHTGE
KPFKCGECGKAFNCGSNLLKHQKTHTGEKPYGCEECGKSFAYSSCLIRHRKRHPRKKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH