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Report for CCDS15819.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15819.1 Public Mus musculus 2 Rexo4 23 108 98 CCDS HistoryNCBI Gene:227656Re-query CCDS DB by CCDS ID:15819.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15819.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114020.9 ENSMUSP00000109653.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114020.9Link to Ensembl Protein Viewer:ENSMUSP00000109653.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000114020Re-query CCDS DB by Protein ID:ENSMUSP00000109653
Original member Current member NCBI NM_207234.2 NP_997117.2 Accepted alive Link to Nucleotide Sequence:NM_207234.2Link to Protein Sequence:NP_997117.2Re-query CCDS DB by Nucleotide ID:NM_207234Re-query CCDS DB by Protein ID:NP_997117Link to BLAST:NP_997117.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997117.2 432 Q6PAQ4 432 100% 0 0

Chromosomal Locations for CCDS 15819.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 26954477 26954596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26955495 26955569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26956289 26956363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26958479 26958567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26960224 26960417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26960603 26960740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26962383 26962723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26964052 26964318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGTGTGCTTGCGCGGTTGCTGGAGTCGCGGTCTCTTCCCTGGTGGTTCCGACTGCGGAGAGCGGGGAGA
TGAAGACGAAGGCCACCGCGCCGGTGCCCCAACCTGGGCCTATCAGGAAGCTCGCTAGGAAGAAAGCCAA
GAAGAAGTTCAGGAAGAGCAAAGCTCTGGCAGGAAGTGGGGTTCCGGGAAGCCACCCGGCGGCTGTGGCA
GGCCGACCGCCGAAGGCCCCCGAGAACTTTTCTCAAAATTGGAAGGCGTTGCAAGAGCTACTGAAACAAA
AGTCACAGGCCGCAGAAAAACCTCTTGTCTCTCAGATGGATGACAAAATGCACCCCCAAATAATCCAGCA
GAACAGAAAAAAGGCCTCAGATAAATCAAAGGGAGACAAGCAGAGGACAGAAAAGGCCAAGAGCACTAGG
GGTTCTGTTACATCTGCACCTACGGACAGGAAGATACTAGTACCTCCCACAGATACCTCTGGAACAGAGC
AGAAGAAAGGAGCCAAGAAGAGGACATATAGTGACATCTCTTCTCATCAAGGGGCTCTCAAGCCTAAGTG
GAAAGCTACGGAGGCAGCTGTTATCTTGAATCAGCCCACGCCCACTGAGGAAGACATCTGGTTTGATGAT
GTGGATCCAGATGATATTGAGGATGCCATAGGCCCAGAGGCAGCCATGCTGGTACGGAAGAGGCTGGGGC
AGAAGAAGAGGACCATCTCCCTGGAGAAGGAACAAGCCTTTGGCGGCTTGACAAAAGCCTTGGCCCTGGA
TTGTGAGATGGTAGGCGTGGGTCCCAAAGGGGAAGAGAGCATCGCAGCCCGTGTGTCGATCGTGAACCAG
TATGGGAAGTGTGTTTATGACAAGTACGTCAAGCCAACTGAGCCAGTGACTGACTACAGGACAGCCGTCA
GTGGGATCCGGCCTGAGAACCTGAAGCAGGGAGAAGAGTTTGAAGTTGTGAAGAAGGAAGTGGCAGAAAT
GTTGAAGGGCAGAATCCTGGTGGGGCATGCGCTACACAATGATTTAAAGGTTTTGTTCCTTGACCATCCA
AAAAAGAAAATCAGGGACACTCAGAAATTCAAACCATTCAGGAGTCGAGTAAAGAGTGGACGACCGTCTC
TGAAACGGCTTTCTGAGAAAATTCTGGGGATCAGGGTCCAACAGGCCGAGCACTGCTCAATCCAGGATGC
CCAGGCAGCAATGAGGCTTTACGTCATGGTGAAACGGGAATGGGAGAGCAGTACTGCAAACCGGCGTGCC
CCAGCTGCCACTCCACAGCACCGCATCAAGAACTCTTAG

Translation (432 aa):
MCACAVAGVAVSSLVVPTAESGEMKTKATAPVPQPGPIRKLARKKAKKKFRKSKALAGSGVPGSHPAAVA
GRPPKAPENFSQNWKALQELLKQKSQAAEKPLVSQMDDKMHPQIIQQNRKKASDKSKGDKQRTEKAKSTR
GSVTSAPTDRKILVPPTDTSGTEQKKGAKKRTYSDISSHQGALKPKWKATEAAVILNQPTPTEEDIWFDD
VDPDDIEDAIGPEAAMLVRKRLGQKKRTISLEKEQAFGGLTKALALDCEMVGVGPKGEESIAARVSIVNQ
YGKCVYDKYVKPTEPVTDYRTAVSGIRPENLKQGEEFEVVKKEVAEMLKGRILVGHALHNDLKVLFLDHP
KKKIRDTQKFKPFRSRVKSGRPSLKRLSEKILGIRVQQAEHCSIQDAQAAMRLYVMVKREWESSTANRRA
PAATPQHRIKNS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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