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Report for CCDS41217.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41217.1 Public Mus musculus Y Zfy2 23 108 98 CCDS HistoryNCBI Gene:22768Re-query CCDS DB by CCDS ID:41217.1See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 41217.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115891.1 ENSMUSP00000111557.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115891.1Link to Ensembl Protein Viewer:ENSMUSP00000111557.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115891Re-query CCDS DB by Protein ID:ENSMUSP00000111557
Original member Current member EBI ENSMUST00000187148.6 ENSMUSP00000139591.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000187148.6Link to Ensembl Protein Viewer:ENSMUSP00000139591.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000187148Re-query CCDS DB by Protein ID:ENSMUSP00000139591
Original member Current member NCBI NM_009571.2 NP_033597.2 Accepted alive Link to Nucleotide Sequence:NM_009571.2Link to Protein Sequence:NP_033597.2Re-query CCDS DB by Nucleotide ID:NM_009571Re-query CCDS DB by Protein ID:NP_033597Link to BLAST:NP_033597.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033597.2 777 P20662 777 100% 0 0

Chromosomal Locations for CCDS 41217.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome Y (NC_000087.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 2106299 2107464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 2108491 2108631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 2109889 2110011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 2116135 2116275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 2117063 2117212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 2121279 2121830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 2133385 2133445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2334 nt):
ATGGATGAAGATGAAATTGAATTGACCCCAGAAGAAGAAAAGTCGTTATTTGATGGAATAGGAGCTGATG
CAGTACACATGGATAGTGACCAGATTTCTGTAGAAGTACAAGAAACTGTTTTTTTATCTAATTCAGATGT
AACTGTGCACAATTTTGTTCCTGATGATCCAGACTCAGTTATAATTCAAGATGTTATTGAAAATGTTCTT
ATTGAAGATGTTCACTGTTCACATATTTTAGAAGAAACAGATATATCTGACAATGTCATTATTCCTGAGC
AAGTTCTCGATTTAGATACAGCTGAAGAAGTGTCTTTAGCACAGTTCTTAATTCCAGACATTTTAACTTC
CAGTATTACATCAACCTCATTGACTATGCCTGAACATGTCTTGATGAGTGAAGCTATACATGTGTCTAAT
GTAGGACATTTTGAACAAGTGATTCATGATAGCCTAGTAGAAAGAGAAATCATCACTGATCCTTTGACAG
CCGACATTTCAGATATACTGGTAGCAGATTGGGCTTCTGAAGCAGTCTTAGATTCCAGTGGGATGCCTCT
GGAGCAGCAAGATGATGCCAGAATCAACTGTGAGGATTATCTAATGATGTCTTTGGATGAGCCTAGCAAA
ACAGATCATGAAGGTTCCTCTGAAGTTACCATGAATGCAGAGTCAGAAACTGATTCTTCTAAATTGGATG
AAGCATCTCCAGAAGTTATCAAGGTGTGCATTCTTAAAGCTGACTCAGAAGTGGATGATGTAGGAGAAAC
TATACAAGCAGTAGAGAGTGAGACCGACAATGGCAATGAAGCTGAAGTCACTGATCAGAGGACTAGCATT
CATGTTCCCAGAGTCAACATTTATATGTTAGCCAGTGATTCTCAAAAGGAAGAAGAAGATACTAAAGTAA
TTGTAGGAGATGAAGATGCTGGTGGCACAGCTGCAGATACTCCTGAGCATGAGCAACAGATGGATGTCAG
TGAAATAAAAGCAGCTTTCCTACCTATTGCATGGACAGCAGCTTATGATAATAATTCTGATGAAATTGAA
GTGCAGAATGCCACTGCCAGTGCTATGTTACACCATGATGAATCTGGTGGCCTTGACAGAGTACCAAAAC
AAAAATCAAAAAAGAAAAAAAGACCTGAATCCAAACAGTACCAGTCAGCAATATTTGTTGCTCCTGATGG
ACAAACTTTACGTGTCTATCCTTGCATGTTTTGTGGGAAAAAATTTAAGACCAAAAGGTTTTTGAAAAGA
CACATAAAAAACCATCCTGAATACCTTGCTAATAAAAAATATCACTGTACTGAGTGTGATTACAGTACCA
ACAAGAAGATAAGCTTACATAATCACATGGAGAGCCACAAGCTAACCATTAAGACAGAAAAGACCACCGA
ATGTGATGACTGTAGGAAGAATCTTTCTCATGCTGGGACAATGCATACAGAAAAAGGAGTCAACAAAACA
TGTAAGTGTAAGTTCTGTGACTATGAAACAGCTGAACAGACATTATTGAATCACCACCTTTTGGTGGTCC
ACAGGAAGAAATTTCCTCACATTTGTGGAGAATGTGGTAAAGGTTTCCGTCACCCATCAGCACTCAAAAA
GCACATACGAGTTCACACAGGAGAGAAGCCCTATGAATGTCAGTATTGTGAGTACAAGTCTGCAGACTCT
TCCAACTTGAAAACTCATATAAAATCTAAGCATAGTAAAGAGATACCACTGAAGTGTGGCATCTGTCTCC
TGACTTTCTCAGATACCAAAGAGGCTCAGCAACATGCCGTTCTGCACCAAGAAAGCAGAACACATCAATG
TTCACATTGCAACCATAAGAGTTCAAACTCAAGTGATTTAAAGCGACACATAATTTCCGTTCACACAAAG
GCGTATCCTCATAAATGTGACATGTGCAGCAAAGGATTTCATAGGCCTTCAGAACTCAAGAAGCATGTGG
CTACCCATAAAAGTAAAAAAATGCACCAATGTAGACACTGTGACTTTAAGAGTCCAGATCCATTTCTGCT
TAGTCACCATATTCTCTCAGCTCACACAAAGAATGTTCCATTCAAGTGTAAGAGATGTAAAAAGGAATTT
CAACAACAGTGTGAGCTTCAAACGCATATGAAGACCCACAGTAGCCGAAAAGTCTATCAGTGTGAGTACT
GTGAATATAGCACCAAAGATGCCTCAGGTTTTAAGCGCCATGTTATCTCCATTCATACGAAAGACTATCC
TCACCGCTGTGACTTCTGCAAGAAAGGATTCCGGAGACCCTCGGAAAAGAATCAACACATAATGCGACAT
CATAAAGAAGTTGGCCTGGCCTAA

Translation (777 aa):
MDEDEIELTPEEEKSLFDGIGADAVHMDSDQISVEVQETVFLSNSDVTVHNFVPDDPDSVIIQDVIENVL
IEDVHCSHILEETDISDNVIIPEQVLDLDTAEEVSLAQFLIPDILTSSITSTSLTMPEHVLMSEAIHVSN
VGHFEQVIHDSLVEREIITDPLTADISDILVADWASEAVLDSSGMPLEQQDDARINCEDYLMMSLDEPSK
TDHEGSSEVTMNAESETDSSKLDEASPEVIKVCILKADSEVDDVGETIQAVESETDNGNEAEVTDQRTSI
HVPRVNIYMLASDSQKEEEDTKVIVGDEDAGGTAADTPEHEQQMDVSEIKAAFLPIAWTAAYDNNSDEIE
VQNATASAMLHHDESGGLDRVPKQKSKKKKRPESKQYQSAIFVAPDGQTLRVYPCMFCGKKFKTKRFLKR
HIKNHPEYLANKKYHCTECDYSTNKKISLHNHMESHKLTIKTEKTTECDDCRKNLSHAGTMHTEKGVNKT
CKCKFCDYETAEQTLLNHHLLVVHRKKFPHICGECGKGFRHPSALKKHIRVHTGEKPYECQYCEYKSADS
SNLKTHIKSKHSKEIPLKCGICLLTFSDTKEAQQHAVLHQESRTHQCSHCNHKSSNSSDLKRHIISVHTK
AYPHKCDMCSKGFHRPSELKKHVATHKSKKMHQCRHCDFKSPDPFLLSHHILSAHTKNVPFKCKRCKKEF
QQQCELQTHMKTHSSRKVYQCEYCEYSTKDASGFKRHVISIHTKDYPHRCDFCKKGFRRPSEKNQHIMRH
HKEVGLA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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