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Report for CCDS38373.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38373.1 Public Mus musculus 2 Taf4 23 108 98 CCDS HistoryNCBI Gene:228980Re-query CCDS DB by CCDS ID:38373.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38373.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041618.12 ENSMUSP00000038610.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041618.12Link to Ensembl Protein Viewer:ENSMUSP00000038610.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041618Re-query CCDS DB by Protein ID:ENSMUSP00000038610
Original member NCBI NM_001081092.1 NP_001074561.1 Updated not alive Link to Nucleotide Sequence:NM_001081092.1Link to Protein Sequence:NP_001074561.1Re-query CCDS DB by Nucleotide ID:NM_001081092Re-query CCDS DB by Protein ID:NP_001074561
Current member NCBI NM_001081092.2 NP_001074561.1 Accepted alive Link to Nucleotide Sequence:NM_001081092.2Link to Protein Sequence:NP_001074561.1Re-query CCDS DB by Nucleotide ID:NM_001081092Re-query CCDS DB by Protein ID:NP_001074561Link to BLAST:NP_001074561.1

Chromosomal Locations for CCDS 38373.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 179913439 179913606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179921152 179921271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179921911 179921967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179922954 179923079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179923979 179924109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179924417 179924586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179926216 179926330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179929277 179929424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179931980 179932225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179932963 179933052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179935029 179935151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179935892 179936011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179938411 179938530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179939794 179939954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 179975413 179976646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3129 nt):
ATGGCGGCGGGCTCGGATCTGCTGGACGAGGTCTTCTTCAACAGCGAGGTGGACGAGAAAGTGGTGAGCG
ATCTGGTGGGCTCGCTCGAGTCGCAGCTGGCGGCCAGCGCGGCCCACCACCACCACCTCGCGCCGCGCAC
GCCCGAGCTGCGGGCCGCGGCCGCCGGCGCGCTCGGGAACCATGTTGTGAGCGGCAGCCCGGCCGGAGCC
GCGGGCGCAGGGCCGGCCGCCTCCGCCGAGGGCGCGCCCGCAGCGGCGCCGGAGCCGCCCCCCGCAGGTA
GAGCGCGGCCGGCGGGTGGGGGCCCGCGGCGCCCGGGCTCCAGCTCACCGCGCCGCTTGCTTGTCCCCGC
AGGGCCCGCGCCGGCGCCCGCCAAGCTGAGGCCGCTGCCCGAGGCCAGCGCGGGGCCCTGCCCCGCCGCC
GCTGCCGCTGCCGCCGCCACCGCCGCCGCCGTCGCGGGGCCGGATCCCGCCGCCGCCGCCCCACCCGCCG
GCCCCGGCGCCTCCAAGCCCGGCCCGCCTGGCCCGCCCGGCCCCGGCGCCGCGCAAACTTTGAATGGGAG
CGCCGCGCCGCCCACCGCGCCGCACGCCGCACCTGCTGTCAGCCCGGTCAACAACGGGCCCGCGCCGCCG
CCCGCCGCCGGCTCTGTCATCCAGGCGGCCCCCGCGCCCGCCGCGCCCTCGCCGCCCGCCGCGCCCGCGC
CCGCCGCGCCCCCGCCGCCCGCGCCCCCAGCGCCTGTCGCGCCAGCCCGGCCGCCCGGGCACCCCGCCGC
GCCCGCGCCCCCCGTGTCACCCGCTGCCGCTGCCGCCGCCGCCGCCGCTGCCGCCGCCGCGCAGAACGGG
GCCGCTCCTGCCCCCGCCGCGGCCTCCGGGGGCGCCGCGGGGTTGGGCCAGCCGGGCGCGGGCGCGCAGG
GGGCCAAGGCCGAGGCGCCCAAGCCCGGACCGGGGCCCGGGCCGGGGCCGGCGGCGGCGGCGGCGGCGGC
GGGGGTCGCGGGCGGGGGCGCGGCGGGCAGTGTGCTGCTCGGGCCCGCCATGCCGGGCGCGCTGCCGGGG
CCTGCGCCCGGGACCCCCGCGGGGCTGGCGAAGGGTGCGGCCGCGGCGACCCCCAGCCTGCCTCGGACGC
CGGCGGCCACCACCGGCGCTATCCGGGCCACGCTGACGCCCACCGTGCTGGCCCCGCGCCTGCCGCAGCC
GCCGCAGAACCCGACCAACATCCAGAACTTCCAGCTGCCCCCAGGAATGGTCCTCGTGCGGAGTGAGAAT
GGGCAGTTGTTAATGATCCCTCAGCAGGCCCTGGCCCAGATGCAGGCCCATGCCCAGGCCCAGCCTCAGA
GTACCATGGCACCCCGTCCTGCAACCCCCACAGGTGCTCCACCTGTCCAGATCTCCACTGTGCAGGCTCC
AGGAACACCTATTATTGCACGGCAGGTGACCCCAACTACCATAATTAAGCAAGTGTCTCAGGCCCAGACG
ACGGTACAGCCCACTACAACCCTACAGCGATCTCCCGGGGTACAGCCTCAGCTGGTTCTGGGTGGCTCCG
CACAGCCAGCCTCACTTGGAACAGCCACAGCTGTTCAGACAGGGACACCTCAACGAACAGTCCCTGGGGC
CAGCACCACCTCTACAGCTGCCACGGAAACTATGGAAAATGTGAAAAAATGCAAAAGTTTTCTATCTACA
TTAATAAAACTGGCTTCCTCTGGTAAACAGTCTACAGAGACAGCGGCTAATGTGAAAGACTTAGTACAAA
ACTTACTGGATGGGAAAATTGAAGCAGAAGATTTCACTAGCAGGTTATACCGAGAACTGAACTCTTCACC
TCAGCCTTACCTTGTGCCTTTCCTGAAGAGGAGCTTACCTGCCTTGAGACAGCTGACCCCAGACTCCGCG
GCCTTTATCCAGCAGAGCCAGCAGCAGCAGCCGCCTGCTTCGCAGGCCACGACTGCACTGACGGCTGTGG
TGCTGAGCAGCTCAGTGCAGCGTACAGCTGGGAAGACAGCTGCCTCGGTGACCAGCGCCCTCCAGCCCCC
GGTCATCAGCCTCACGCAGCCCACACAGGTTGGCGTTGGCAAGCAGGCGCCGCCCACACCACTGGTGATC
CAGCAGCCCCCGAAGCCTGGAGCCTTGATCCGGCCCCCGCAGGTGACCTTGACGCAGACACCCATGGTCG
CATTGCGGCAGCCTCACAACCGGATCATGCTCACCACACCACAGCAGATCCAACTGAACCAGCTGCAGCC
AGTCCCTGTGGTGAAACCCACCGTGTTACCTGGAACCAAAGCCCTGTCTACTGTATCTGCACAAGCAGCT
GCTGCCCAGAAAAACAAACTCAAGGAGCCGGGGGGAGGCTCCTTCCGGGATGATGATGACATCAATGATG
TTGCGTCAATGGCTGGAGTGAACCTGTCTGAAGAAAGTGCAAGGATATTGGCCACAAACTCTGAGTTGGT
GGGGACGTTGACCCGATCCTGTAAAGACGACACCTTCCTCCTCCCCGCGCCTTTGCAGAGGAGGATACTG
GAGATAGGTAAAAAGCACGGCATCACGGAACTGCATCCAGATGTAGTGAGTTACGTGTCTCATGCCACAC
AGCAAAGGCTGCAGAATCTTGTAGAAAAAATATCTGAAACGGCTCAGCAGAAAAACTTCTCTTATAAGGA
CGACGACAGATACGAGCAAGCGAGTGATGTCCGGGCTCAGCTCAAATTCTTTGAACAACTGGATCAGATT
GAAAAGCAGAGGAAAGATGAGCAGGAGAGGGAGATCTTAATGCGGGCAGCGAAGTCTCGATCCAGACAAG
AAGACCCAGAGCAATTAAGGTTGAAGCAGAAAGCAAAAGAGATGCAGCAGCAGGAGCTGGCACAGATGCG
ACAACGAGATGCCAACCTCACTGCACTGGCAGCGATCGGGCCCAGGAAAAAGAGGAAAGTGGACTGCACT
GGGCCAGGATCAGGAGCAGAGGGCTCAGGCCCGGGCGCAGCAGTCCCAGGCGGCTCCGGCGTGGGAACCC
CCAGACAGTTCACACGGCAAAGAATCACGCGGGTCAACCTCAGGGACCTCATATTTTGTTTAGAAAACGA
GCGTGAGACAAGCCATTCACTGTTGCTCTACAAAGCATTCCTTAAGTAA

Translation (1042 aa):
MAAGSDLLDEVFFNSEVDEKVVSDLVGSLESQLAASAAHHHHLAPRTPELRAAAAGALGNHVVSGSPAGA
AGAGPAASAEGAPAAAPEPPPAGRARPAGGGPRRPGSSSPRRLLVPAGPAPAPAKLRPLPEASAGPCPAA
AAAAAATAAAVAGPDPAAAAPPAGPGASKPGPPGPPGPGAAQTLNGSAAPPTAPHAAPAVSPVNNGPAPP
PAAGSVIQAAPAPAAPSPPAAPAPAAPPPPAPPAPVAPARPPGHPAAPAPPVSPAAAAAAAAAAAAAQNG
AAPAPAAASGGAAGLGQPGAGAQGAKAEAPKPGPGPGPGPAAAAAAAGVAGGGAAGSVLLGPAMPGALPG
PAPGTPAGLAKGAAAATPSLPRTPAATTGAIRATLTPTVLAPRLPQPPQNPTNIQNFQLPPGMVLVRSEN
GQLLMIPQQALAQMQAHAQAQPQSTMAPRPATPTGAPPVQISTVQAPGTPIIARQVTPTTIIKQVSQAQT
TVQPTTTLQRSPGVQPQLVLGGSAQPASLGTATAVQTGTPQRTVPGASTTSTAATETMENVKKCKSFLST
LIKLASSGKQSTETAANVKDLVQNLLDGKIEAEDFTSRLYRELNSSPQPYLVPFLKRSLPALRQLTPDSA
AFIQQSQQQQPPASQATTALTAVVLSSSVQRTAGKTAASVTSALQPPVISLTQPTQVGVGKQAPPTPLVI
QQPPKPGALIRPPQVTLTQTPMVALRQPHNRIMLTTPQQIQLNQLQPVPVVKPTVLPGTKALSTVSAQAA
AAQKNKLKEPGGGSFRDDDDINDVASMAGVNLSEESARILATNSELVGTLTRSCKDDTFLLPAPLQRRIL
EIGKKHGITELHPDVVSYVSHATQQRLQNLVEKISETAQQKNFSYKDDDRYEQASDVRAQLKFFEQLDQI
EKQRKDEQEREILMRAAKSRSRQEDPEQLRLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKVDCT
GPGSGAEGSGPGAAVPGGSGVGTPRQFTRQRITRVNLRDLIFCLENERETSHSLLLYKAFLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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