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Report for CCDS17367.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17367.1 Public Mus musculus 3 Eif2a 23 108 98 CCDS HistoryNCBI Gene:229317Re-query CCDS DB by CCDS ID:17367.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17367.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029387.14 ENSMUSP00000029387.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029387.14Link to Ensembl Protein Viewer:ENSMUSP00000029387.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029387Re-query CCDS DB by Protein ID:ENSMUSP00000029387
Original member NCBI NM_001005509.2 NP_001005509.1 Updated not alive Link to Nucleotide Sequence:NM_001005509.2Link to Protein Sequence:NP_001005509.1Re-query CCDS DB by Nucleotide ID:NM_001005509Re-query CCDS DB by Protein ID:NP_001005509
Current member NCBI NM_001005509.3 NP_001005509.1 Accepted alive Link to Nucleotide Sequence:NM_001005509.3Link to Protein Sequence:NP_001005509.1Re-query CCDS DB by Nucleotide ID:NM_001005509Re-query CCDS DB by Protein ID:NP_001005509Link to BLAST:NP_001005509.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005509.1 581 Q8BJW6-1 581 100% 0 0

Chromosomal Locations for CCDS 17367.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 58526059 58526086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58531087 58531156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58537534 58537608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58539528 58539646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58541040 58541139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58541634 58541716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58544995 58545068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58545228 58545372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58545500 58545616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58548393 58548964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58552569 58552682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58555535 58555651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58556573 58556638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58557121 58557186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1746 nt):
ATGGCGCCGTCCACACCGCTGTTGACAGTCAGAGGATCAGAGGGACTGTACATGGTGAATGGACCACCAC
ACTTCACAGAAAGCACGGTGCTTCCCAGAGAATCTGGAAGAAATTGCAAAGTGTACACTTTTAGTAAGGA
TGGGACATTGTTTGCCTGGAGCAATGGAGAAAAAGTAAATATAATCAATGTCGCTAACAAGGGACTACTG
CACTCCTTCGACCTCCCAAAAGCAGTTTGCCTTGAATTCTCACCAAATAACACTGTCCTGGCAACGTGGC
AGCCTTACACTACTTCTAAAGATGGCACTGCTGGGACGCCTAACCTACAACTTTATGACATGAAAACTGG
AGCATGTTTGAAATCGTTCATCCAGAAAAAAATGCAAAATTGGTGTCCTTCCTGGTCAGATGATGAAATT
ATTTGTGCCCGGAATGTTAACAACGAAGTTCACTTCTTTGAGAACAACAATTTTAACACAATTGCAAATA
AATTACATTTGCAAAAAGTTAATGACTTTAATTTATCACCTGGAACCCAACCTTATAAGGTGGCAGTTTA
TGTCCCAGGAAGTAAAGGTGCCCCCTCATTTGTTCGACTGTATCAGTATCCCAACTTTGCCGGACCTCAG
GCAGCACTGGCCAATAAAAGCTTCTTTAAAGCTGATAAGGTTACAATGCTGTGGAATAAAAAAGCTACTG
CTGTGCTGGTAATAGCCAGTACAGAGGTTGACAAGACAGGAGCCTCCTACTATGGAGAACAAACACTGCA
CTACATTGCAACAAATGGAGAAAGTGCTGTGGTACAATTACCAAAAAATGGCCCAATTTATGATGTAGTT
TGGAATTCCAGTTCTACTGAGTTTTGCGCTGTTTATGGTTTTATGCCTGCGAAAGCAACAGTTTTCAACC
TGAAGTGTGATCCTGTGTTTGACTTTGGGACTGGTCCTCGCAACGCAGCCTTCTATAGCCCTCATGGACA
TATATTAGTGCTGGCTGGATTTGGAAATCTTCGAGGACAAATGGAAGTATGGGATGTTAAAAACTACAAG
CTTATTTCTAAGCCAGTGGCTTCTGATTCTACATATTTTGCCTGGTGCCCAGATGGTGAGCATATCTTAA
CAGCCACATGTGCTCCTAGGTTACGTGTTAATAATGGGTATAAGATCTGGCATTATACTGGCTCTCTTTT
GCATAAGTATGATGTGCCATCAAATGGAGAATTATGGCAGGTTTCTTGGCAGCCATTTTTGGATGGAATA
TTTCCAGCAAAAACGATAAAGTACCAAGCAGTTCCAAGTGAAGTGCCTAGTGAGGAGCCTAAAGTTGCAA
CAGCTTATAGACCTCCAGCCTTAAGAAATAAGCCAGTCACCAATTCCAAACTGCATGAAGAGGAACCTCC
CCAGAATATGAAGCCACATCCAGGAAGTGACAAGCCATTATCAAAAACAGCCCTTAAAAATCAAAGGAAG
CATGAAGCTAAAAAAGCTGCAAAACAGGAAGCAAGAAGTGATGCGGCTCCTACTCCTGTCCCACAGAGTG
CACCACGGAACACGGTCACCCAGTCTGCTTCTGGTGATCCTGAAGTAGACAAAAAAATTAAGAATCTAAA
GAAGAAACTGAAAGCCATAGAGCAGCTAAAAGAGCAGGCAGCCGCCGGGAAACAGCTAGAAAAAAATCAG
TTGGAGAAAATTCAGAAAGAGACAGCCCTTCTCCAAGAGCTTGAAGATTTGGAATTGGGAGTTTGA

Translation (581 aa):
MAPSTPLLTVRGSEGLYMVNGPPHFTESTVLPRESGRNCKVYTFSKDGTLFAWSNGEKVNIINVANKGLL
HSFDLPKAVCLEFSPNNTVLATWQPYTTSKDGTAGTPNLQLYDMKTGACLKSFIQKKMQNWCPSWSDDEI
ICARNVNNEVHFFENNNFNTIANKLHLQKVNDFNLSPGTQPYKVAVYVPGSKGAPSFVRLYQYPNFAGPQ
AALANKSFFKADKVTMLWNKKATAVLVIASTEVDKTGASYYGEQTLHYIATNGESAVVQLPKNGPIYDVV
WNSSSTEFCAVYGFMPAKATVFNLKCDPVFDFGTGPRNAAFYSPHGHILVLAGFGNLRGQMEVWDVKNYK
LISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWHYTGSLLHKYDVPSNGELWQVSWQPFLDGI
FPAKTIKYQAVPSEVPSEEPKVATAYRPPALRNKPVTNSKLHEEEPPQNMKPHPGSDKPLSKTALKNQRK
HEAKKAAKQEARSDAAPTPVPQSAPRNTVTQSASGDPEVDKKIKNLKKKLKAIEQLKEQAAAGKQLEKNQ
LEKIQKETALLQELEDLELGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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