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Report for CCDS15276.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15276.1 Public Mus musculus 1 Rab29 23 108 98 CCDS HistoryNCBI Gene:226422Re-query CCDS DB by CCDS ID:15276.1Re-query CCDS DB by GeneID:226422See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15276.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027693.7 ENSMUSP00000027693.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027693.7Link to Ensembl Protein Viewer:ENSMUSP00000027693.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027693Re-query CCDS DB by Protein ID:ENSMUSP00000027693
Original member Current member EBI ENSMUST00000112386.7 ENSMUSP00000108005.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112386.7Link to Ensembl Protein Viewer:ENSMUSP00000108005.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112386Re-query CCDS DB by Protein ID:ENSMUSP00000108005
Original member NCBI NM_144875.2 NP_659124.2 Updated not alive Link to Nucleotide Sequence:NM_144875.2Link to Protein Sequence:NP_659124.2Re-query CCDS DB by Nucleotide ID:NM_144875Re-query CCDS DB by Protein ID:NP_659124
Current member NCBI NM_144875.3 NP_659124.2 Accepted alive Link to Nucleotide Sequence:NM_144875.3Link to Protein Sequence:NP_659124.2Re-query CCDS DB by Nucleotide ID:NM_144875Re-query CCDS DB by Protein ID:NP_659124Link to BLAST:NP_659124.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659124.2 204 Q91YQ1 204 99.5098% 0 1

Chromosomal Locations for CCDS 15276.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 131867652 131867775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131869933 131870004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131870680 131870861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131872067 131872188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131872466 131872580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGGGCAGCCGAGATCACCTGTTTAAAGTGCTGGTGGTGGGGGACGCCGCCGTTGGCAAGACGTCTCTGG
TCCAGCGCTACTCCCAGGACAGCTTCAGCAAGCACTACAAGTCCACCGTGGGAGTGGATTTTGCTCTCAA
GGTTCTCCAGTGGTCTGACTCAGAGATGGTGCGGCTGCAGCTCTGGGATATTGCAGGGCAGGAGCGTTTC
ACATCCATGACACGACTCTACTATAGAGATGCTTCTGCCTGTGTTATTATGTTTGACGTCACCAATGCCA
CTACTTTCAGCAACAGCCAAAGATGGAAACAGGATCTGGACAGCAAGCTCACACTACCCAGTGGGGAGCC
AGTGCCCTGCCTGCTCTTGGCCAACAAGAGTGATCTGTCCCCTTGGGCAGTGAGCCGGGACCAGATCGAC
CAGTTCAGTAAAGAGAATGGCTTCACAGGTTGGACAGAAACATCAGTCAAGGAGAACAAAAATATTAATG
AGGCCATGAGAGTCCTCGTTGAAAAGATGATGAACAATTCCAGGGAAGATGTGATGTCTTTGTCCACCCA
AGGGAACTACATCAATCTCCAAGCCAAGCCCTCCTCTGGCTGGACATGCTGCTAG

Translation (204 aa):
MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDSEMVRLQLWDIAGQERF
TSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLANKSDLSPWAVSRDQID
QFSKENGFTGWTETSVKENKNINEAMRVLVEKMMNNSREDVMSLSTQGNYINLQAKPSSGWTCC


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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