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Report for CCDS9003.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9003.1 Public Homo sapiens 12 RAB21 24 110 108 CCDS HistoryNCBI Gene:23011Re-query CCDS DB by CCDS ID:9003.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9003.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261263.5 ENSP00000261263.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261263.5Link to Ensembl Protein Viewer:ENSP00000261263.3Re-query CCDS DB by Nucleotide ID:ENST00000261263Re-query CCDS DB by Protein ID:ENSP00000261263
Original member Current member NCBI NM_014999.4 NP_055814.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014999.4Link to Protein Sequence:NP_055814.1Re-query CCDS DB by Nucleotide ID:NM_014999Re-query CCDS DB by Protein ID:NP_055814Link to BLAST:NP_055814.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055814.1 225 Q9UL25 225 100% 0 0

Chromosomal Locations for CCDS 9003.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 71755130 71755288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71769800 71769859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71770592 71770699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71773959 71774022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71782031 71782085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71782570 71782658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 71785531 71785673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (678 nt):
ATGGCTGCGGCCGGCGGCGGCGGCGGCGGGGCGGCGGCGGCGGGCCGAGCCTACTCGTTCAAGGTGGTGC
TGCTGGGGGAAGGCTGCGTGGGGAAGACGTCGCTGGTGCTGCGCTACTGCGAGAACAAGTTTAACGACAA
GCACATCACCACTCTGCAGGCATCATTCTTAACAAAGAAGTTAAATATTGGTGGGAAAAGAGTAAACCTT
GCCATATGGGATACGGCAGGTCAAGAGAGATTCCATGCATTGGGTCCAATTTACTACAGAGATTCAAATG
GAGCGATTTTAGTTTATGACATAACAGATGAAGATTCTTTTCAGAAGGTAAAAAACTGGGTCAAAGAATT
ACGGAAAATGTTGGGAAATGAAATCTGTTTATGTATAGTTGGTAATAAAATAGACTTGGAAAAGGAGAGA
CATGTTTCCATTCAAGAAGCAGAGTCGTATGCAGAATCTGTGGGAGCAAAACATTATCATACTTCAGCCA
AACAGAACAAAGGAATTGAGGAACTCTTTCTTGACCTTTGTAAAAGGATGATAGAAACAGCACAAGTGGA
TGAGAGAGCAAAAGGCAATGGCTCTAGTCAGCCGGGAACTGCAAGGCGAGGTGTACAGATTATTGATGAT
GAACCTCAAGCCCAGACCAGTGGTGGAGGGTGCTGTTCTTCTGGATAA

Translation (225 aa):
MAAAGGGGGGAAAAGRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNL
AIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER
HVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQPGTARRGVQIIDD
EPQAQTSGGGCCSSG


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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