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Report for CCDS9356.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9356.1 Public Homo sapiens 13 SPART 24 110 108 CCDS HistoryNCBI Gene:23111Re-query CCDS DB by CCDS ID:9356.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9356.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355182.8 ENSP00000347314.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000355182.8Link to Ensembl Protein Viewer:ENSP00000347314.4Re-query CCDS DB by Nucleotide ID:ENST00000355182Re-query CCDS DB by Protein ID:ENSP00000347314
Original member Current member EBI ENST00000438666.7 ENSP00000406061.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000438666.7Link to Ensembl Protein Viewer:ENSP00000406061.2Re-query CCDS DB by Nucleotide ID:ENST00000438666Re-query CCDS DB by Protein ID:ENSP00000406061
Original member Current member EBI ENST00000451493.5 ENSP00000414147.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000451493.5Link to Ensembl Protein Viewer:ENSP00000414147.1Re-query CCDS DB by Nucleotide ID:ENST00000451493Re-query CCDS DB by Protein ID:ENSP00000414147
Original member Current member EBI ENST00000494062.2 ENSP00000473599.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000494062.2Link to Ensembl Protein Viewer:ENSP00000473599.1Re-query CCDS DB by Nucleotide ID:ENST00000494062Re-query CCDS DB by Protein ID:ENSP00000473599
Original member Current member EBI ENST00000650221.1 ENSP00000497209.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000650221.1Link to Ensembl Protein Viewer:ENSP00000497209.1Re-query CCDS DB by Nucleotide ID:ENST00000650221Re-query CCDS DB by Protein ID:ENSP00000497209
Original member Current member NCBI NM_001142294.2 NP_001135766.1 Accepted alive Link to Nucleotide Sequence:NM_001142294.2Link to Protein Sequence:NP_001135766.1Re-query CCDS DB by Nucleotide ID:NM_001142294Re-query CCDS DB by Protein ID:NP_001135766Link to BLAST:NP_001135766.1
Original member Current member NCBI NM_001142295.2 NP_001135767.1 Accepted alive Link to Nucleotide Sequence:NM_001142295.2Link to Protein Sequence:NP_001135767.1Re-query CCDS DB by Nucleotide ID:NM_001142295Re-query CCDS DB by Protein ID:NP_001135767Link to BLAST:NP_001135767.1
Original member Current member NCBI NM_001142296.2 NP_001135768.1 Accepted alive Link to Nucleotide Sequence:NM_001142296.2Link to Protein Sequence:NP_001135768.1Re-query CCDS DB by Nucleotide ID:NM_001142296Re-query CCDS DB by Protein ID:NP_001135768Link to BLAST:NP_001135768.1
Original member Current member NCBI NM_015087.5 NP_055902.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015087.5Link to Protein Sequence:NP_055902.1Re-query CCDS DB by Nucleotide ID:NM_015087Re-query CCDS DB by Protein ID:NP_055902Link to BLAST:NP_055902.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135766.1 666 Q8N0X7 666 100% 0 0
NP_001135767.1 666 Q8N0X7 666 100% 0 0
NP_001135768.1 666 Q8N0X7 666 100% 0 0
NP_055902.1 666 Q8N0X7 666 100% 0 0

Chromosomal Locations for CCDS 9356.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 36304365 36304632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36312145 36312235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36312319 36312477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36314227 36314421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36326575 36326698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36329362 36329517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36331399 36331596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36335021 36335830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2001 nt):
ATGGAGCAAGAGCCACAAAATGGAGAACCTGCTGAAATTAAGATCATCAGAGAAGCATATAAGAAGGCCT
TTTTATTTGTTAACAAAGGTCTGAATACAGATGAATTAGGTCAGAAGGAAGAAGCAAAGAACTACTATAA
GCAAGGAATAGGACACCTGCTCAGAGGGATCAGCATTTCATCAAAAGAGTCTGAACACACAGGTCCTGGG
TGGGAATCTGCTAGACAGATGCAACAGAAAATGAAAGAAACTCTACAGAATGTACGCACCAGGCTGGAAA
TTCTAGAGAAGGGTCTTGCCACTTCTCTGCAGAATGATCTTCAGGAGGTGCCCAAGTTATATCCAGAATT
TCCACCTAAAGACATGTGTGAAAAATTACCAGAGCCTCAGTCTTTTAGTTCAGCTCCTCAGCATGCTGAA
GTAAATGGAAACACCTCAACTCCAAGTGCAGGGGCAGTTGCTGCACCTGCTTCTCTGTCTTTACCATCAC
AAAGTTGTCCAGCAGAAGCTCCTCCTGCTTATACTCCTCAAGCTGCTGAAGGTCACTACACTGTATCCTA
TGGAACAGATTCTGGGGAGTTTTCATCAGTTGGAGAGGAGTTTTATAGGAATCATTCTCAGCCACCGCCT
CTTGAGACCTTAGGGCTGGATGCAGATGAATTGATTTTGATACCAAATGGAGTACAGATTTTTTTTGTAA
ATCCTGCAGGGGAGGTTAGTGCACCTTCGTATCCTGGGTACCTTCGAATTGTGAGGTTTTTGGATAATTC
TCTCGATACGGTTCTAAACCGTCCTCCCGGGTTTCTTCAGGTTTGTGACTGGTTATATCCTCTAGTTCCT
GATAGATCTCCGGTTCTGAAATGTACTGCGGGAGCCTACATGTTTCCTGATACAATGCTACAAGCAGCAG
GATGCTTTGTGGGGGTCGTCCTGTCCTCTGAGTTACCAGAGGATGATAGAGAGCTCTTTGAGGATCTGTT
AAGGCAAATGTCTGACCTTCGGCTCCAGGCCAACTGGAACAGAGCAGAAGAAGAAAATGAATTCCAAATC
CCTGGAAGAACTAGACCCTCCTCTGACCAACTAAAAGAAGCCTCTGGCACTGATGTGAAACAGTTGGACC
AAGGCAATAAGGATGTACGTCATAAAGGAAAACGTGGAAAAAGGGCTAAAGATACTTCAAGTGAAGAAGT
TAACCTGAGTCACATTGTACCATGTGAGCCAGTTCCAGAAGAAAAGCCAAAAGAATTACCTGAATGGAGT
GAAAAAGTGGCTCACAACATTTTGTCAGGTGCTTCCTGGGTGAGTTGGGGTTTAGTCAAAGGTGCTGAGA
TTACTGGTAAGGCAATCCAGAAAGGTGCTTCTAAACTCCGAGAGCGGATTCAACCAGAAGAAAAACCCGT
GGAAGTTAGTCCAGCTGTCACCAAGGGACTTTATATAGCGAAGCAAGCTACAGGAGGAGCAGCAAAAGTC
AGTCAGTTCCTGGTTGATGGAGTTTGCACTGTAGCAAATTGCGTTGGAAAAGAACTAGCTCCACATGTCA
AGAAGCATGGAAGCAAACTTGTTCCAGAATCTCTTAAAAAAGACAAAGATGGGAAATCTCCTCTGGATGG
TGCTATGGTTGTAGCAGCAAGTAGTGTTCAAGGATTTTCAACTGTCTGGCAAGGATTGGAATGTGCAGCT
AAATGCATCGTTAACAATGTTTCAGCAGAAACTGTACAAACTGTCAGATACAAATACGGATATAATGCAG
GAGAAGCTACCCACCATGCGGTGGATTCTGCGGTCAATGTTGGCGTAACTGCCTACAATATTAACAACAT
TGGTATCAAAGCAATGGTGAAGAAAACTGCAACACAAACAGGACACACTCTCCTTGAGGACTATCAGATA
GTTGATAATTCTCAGAGGGAAAATCAAGAAGGAGCAGCAAATGTCAACGTGAGAGGGGAGAAGGATGAGC
AGACGAAGGAAGTAAAGGAGGCAAAGAAGAAAGATAAATGA

Translation (666 aa):
MEQEPQNGEPAEIKIIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPG
WESARQMQQKMKETLQNVRTRLEILEKGLATSLQNDLQEVPKLYPEFPPKDMCEKLPEPQSFSSAPQHAE
VNGNTSTPSAGAVAAPASLSLPSQSCPAEAPPAYTPQAAEGHYTVSYGTDSGEFSSVGEEFYRNHSQPPP
LETLGLDADELILIPNGVQIFFVNPAGEVSAPSYPGYLRIVRFLDNSLDTVLNRPPGFLQVCDWLYPLVP
DRSPVLKCTAGAYMFPDTMLQAAGCFVGVVLSSELPEDDRELFEDLLRQMSDLRLQANWNRAEEENEFQI
PGRTRPSSDQLKEASGTDVKQLDQGNKDVRHKGKRGKRAKDTSSEEVNLSHIVPCEPVPEEKPKELPEWS
EKVAHNILSGASWVSWGLVKGAEITGKAIQKGASKLRERIQPEEKPVEVSPAVTKGLYIAKQATGGAAKV
SQFLVDGVCTVANCVGKELAPHVKKHGSKLVPESLKKDKDGKSPLDGAMVVAASSVQGFSTVWQGLECAA
KCIVNNVSAETVQTVRYKYGYNAGEATHHAVDSAVNVGVTAYNINNIGIKAMVKKTATQTGHTLLEDYQI
VDNSQRENQEGAANVNVRGEKDEQTKEVKEAKKKDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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