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Report for CCDS19336.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19336.1 Public Mus musculus 5 Slc10a4 23 108 98 CCDS HistoryNCBI Gene:231290Re-query CCDS DB by CCDS ID:19336.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19336.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031127.10 ENSMUSP00000031127.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031127.10Link to Ensembl Protein Viewer:ENSMUSP00000031127.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031127Re-query CCDS DB by Protein ID:ENSMUSP00000031127
Original member Current member NCBI NM_173403.2 NP_775579.2 Accepted alive Link to Nucleotide Sequence:NM_173403.2Link to Protein Sequence:NP_775579.2Re-query CCDS DB by Nucleotide ID:NM_173403Re-query CCDS DB by Protein ID:NP_775579Link to BLAST:NP_775579.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775579.2 437 Q3UEZ8 437 100% 0 0

Chromosomal Locations for CCDS 19336.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 73007067 73007656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73008360 73008570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73011835 73012347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGGACAGCCTGGACAACACCACCCTGCTCCTTGCCCCGTCCTCGCTGCTGCCTGACAACCTCACCCTGT
CTCCCAACGCCGGCAGCCCGAGCGCCAGCACCCTTTCGCCTCTCGCTGTCACCTCTAGTCCCGGTCCGGG
GCTCAGCCTCGCTCCAAGTCCAAGCATCGGCTTTAGCCCCGAGGCAACCCCGACTCCAGAGCCCACGAGC
AGCAGCCTCACGGTCGGCGTGGCTGGCCAGGGCTCCTCCGCTTTCCCCCGGCCCTGGATCCCCCACGAGC
CCCCATTCTGGGACACGCCGCTCAACCACGGGCTGAATGTGTTTGTGGGCGCCGCCTTGTGCATCACCAT
GCTGGGTCTAGGCTGTACCGTGGACGTGAACCACTTCGGGGCGCACGTCCGGCGGCCCGTGGGCGCTCTG
CTGGCTGCGCTCTGCCAGTTCGGCTTCTTGCCGCTGCTAGCCTTCTTGCTGGCCCTCATCTTCAAGCTGG
ATGAGGTGGCCGCGGTGGCTGTACTCCTATGTGGCTGCTGTCCTGGTGGAAATCTCTCCAATCTCATGTC
CCTGCTGGTAGACGGCGACATGAACCTCAGCATCATCATGACCATTTCCTCCACACTCCTGGCCCTGGTG
TTGATGCCCCTCTGCCTCTGGATCTACAGCCGTGCCTGGATCAATACCCCTCTGGTGCAATTGCTCCCCC
TAGGGGCAGTCACCCTGACTCTCTGCAGCACTCTCATTCCTATTGGGCTAGGCGTCTTCATTCGCTACAA
ATACAACCGCGTGGCTGACTACATCGTGAAGGTTTCCCTGTGGTCTCTGCTTGTGACCCTGGTGGTTCTT
TTCATAATGACTGGCACCATGCTGGGACCTGAACTGCTGGCAAGCATTCCCGCAACTGTTTACGTGGTCG
CCATTTTTATGCCTCTGGCGGGCTACGCCTCGGGTTATGGCTTAGCTACCCTCTTCCACCTCCCGCCCAA
CTGCAAGCGGACTGTGTGTCTGGAAACAGGAAGTCAGAACGTGCAGCTCTGCACTGCGATTCTCAAACTG
GCCTTCCCGCCTCGCTTTATAGGTAGCATGTACATGTTCCCTCTGCTCTACGCCCTCTTCCAGTCTGCCG
AGGCAGGGGTCTTCGTGTTGATCTACAAAATGTACGGAAGTGAGATACTGCACAAGCGAGAGGCCCTAGA
CGAAGACGAAGACACCGATATTTCTTATAAGAAACTGAAAGAAGAGGAAATGGCAGACACCTCCTATGGC
ACCGTGGGGACGGATGACTTAGTGATGATGGAGACCACCCAGACCGCCCTCTGA

Translation (437 aa):
MDSLDNTTLLLAPSSLLPDNLTLSPNAGSPSASTLSPLAVTSSPGPGLSLAPSPSIGFSPEATPTPEPTS
SSLTVGVAGQGSSAFPRPWIPHEPPFWDTPLNHGLNVFVGAALCITMLGLGCTVDVNHFGAHVRRPVGAL
LAALCQFGFLPLLAFLLALIFKLDEVAAVAVLLCGCCPGGNLSNLMSLLVDGDMNLSIIMTISSTLLALV
LMPLCLWIYSRAWINTPLVQLLPLGAVTLTLCSTLIPIGLGVFIRYKYNRVADYIVKVSLWSLLVTLVVL
FIMTGTMLGPELLASIPATVYVVAIFMPLAGYASGYGLATLFHLPPNCKRTVCLETGSQNVQLCTAILKL
AFPPRFIGSMYMFPLLYALFQSAEAGVFVLIYKMYGSEILHKREALDEDEDTDISYKKLKEEEMADTSYG
TVGTDDLVMMETTQTAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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