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Report for CCDS19780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19780.1 Public Mus musculus 5 Pilra 23 108 98 CCDS HistoryNCBI Gene:231805Re-query CCDS DB by CCDS ID:19780.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19780.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058897.10 ENSMUSP00000050313.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058897.10Link to Ensembl Protein Viewer:ENSMUSP00000050313.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000058897Re-query CCDS DB by Protein ID:ENSMUSP00000050313
Original member Current member NCBI NM_153510.3 NP_705730.1 Accepted alive Link to Nucleotide Sequence:NM_153510.3Link to Protein Sequence:NP_705730.1Re-query CCDS DB by Nucleotide ID:NM_153510Re-query CCDS DB by Protein ID:NP_705730Link to BLAST:NP_705730.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705730.1 302 Q2YFS3-1 302 100% 0 0

Chromosomal Locations for CCDS 19780.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137823472 137823597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137823756 137823787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137824003 137824049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137826854 137826884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137831128 137831328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137835331 137835717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137836035 137836119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (909 nt):
ATGGCTTTGCTGATCTCGCTTCCTGGAGGGACTCCAGCCATGGCTCAGATCCTGCTTCTGCTCTCATCAG
CCTGTCTGCATGCTGGAAATTCAGAAAGATCCAACAGAAAAAATGGCTTTGGGGTCAACCAACCTGAAAG
CTGCTCTGGAGTCCAGGGTGGCTCCATCGACATCCCCTTCTCCTTCTACTTCCCCTGGAAGTTGGCCAAG
GATCCACAGATGAGCATAGCCTGGAGATGGAAGGATTTCCATGGGGAATTCATCTACAACTCCTCCCTGC
CTTTCATACATGAGCACTTCAAGGGCCGGCTCATCCTGAACTGGACACAGGGTCAGACATCTGGAGTCCT
CAGAATCCTGAACTTGAAGGAGTCTGACCAGACCCGGTACTTTGGCAGAGTTTTTCTGCAAACAACAGAA
GGCATACAGTTTTGGCAGTCAATTCCTGGGACCCAACTCAATGTGACCAATGCCACCTGCACCCCCACTA
CACTTCCAAGCACCACTGCTGCAACTTCTGCACACACCCAAAATGACATAACAGAAGTCAAGAGTGCTAA
CATTGGTGGCCTGGATCTGCAAACCACAGTTGGGTTGGCAACGGCTGCTGCTGTGTTCCTGGTTGGGGTT
TTGGGATTGATAGTGTTCCTCTGGTGGAAGAGAAGAAGGCAAGGCCAGAAGACTAAAGCTGAAATCCCAG
CCAGGGAGCCATTGGAAACCAGTGAGAAACATGAGAGTGTTGGCCATGAAGGACAATGTATGGATCCCAA
AGAAAACCCCAAGGATAATAACATCGTGTATGCTTCCATCTCCCTCTCAAGCCCGACCTCACCAGGAACA
GCGCCCAACCTGCCTGTCCATGGGAACCCCCAGGAAGAGACTGTGTACTCCATCGTAAAGGCCAAATAA

Translation (302 aa):
MALLISLPGGTPAMAQILLLLSSACLHAGNSERSNRKNGFGVNQPESCSGVQGGSIDIPFSFYFPWKLAK
DPQMSIAWRWKDFHGEFIYNSSLPFIHEHFKGRLILNWTQGQTSGVLRILNLKESDQTRYFGRVFLQTTE
GIQFWQSIPGTQLNVTNATCTPTTLPSTTAATSAHTQNDITEVKSANIGGLDLQTTVGLATAAAVFLVGV
LGLIVFLWWKRRRQGQKTKAEIPAREPLETSEKHESVGHEGQCMDPKENPKDNNIVYASISLSSPTSPGT
APNLPVHGNPQEETVYSIVKAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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