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Report for CCDS21139.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21139.1 Public Mus musculus 7 Garre1 23 108 98 CCDS HistoryNCBI Gene:233103Re-query CCDS DB by CCDS ID:21139.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21139.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085592.5 ENSMUSP00000082730.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085592.5Link to Ensembl Protein Viewer:ENSMUSP00000082730.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000085592Re-query CCDS DB by Protein ID:ENSMUSP00000082730
Original member Current member EBI ENSMUST00000108074.7 ENSMUSP00000103709.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108074.7Link to Ensembl Protein Viewer:ENSMUSP00000103709.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108074Re-query CCDS DB by Protein ID:ENSMUSP00000103709
Original member NCBI NM_172741.2 NP_766329.1 Updated not alive Link to Nucleotide Sequence:NM_172741.2Link to Protein Sequence:NP_766329.1Re-query CCDS DB by Nucleotide ID:NM_172741Re-query CCDS DB by Protein ID:NP_766329
Current member NCBI NM_172741.3 NP_766329.1 Accepted alive Link to Nucleotide Sequence:NM_172741.3Link to Protein Sequence:NP_766329.1Re-query CCDS DB by Nucleotide ID:NM_172741Re-query CCDS DB by Protein ID:NP_766329Link to BLAST:NP_766329.1

Chromosomal Locations for CCDS 21139.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 34238929 34239237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34239744 34239822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34240509 34240646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34242240 34242405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34244966 34245978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34248107 34248232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34253987 34254084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34256412 34256570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34257347 34257508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34257632 34257727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34258013 34258153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34263553 34263750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34284702 34285196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3180 nt):
ATGTATTGCTGCAGTGCCCAGGACAATAAGATGGACTACAAGCGGCGCTTCCTGCTTGGCGGGTCCAAGC
AGAAGGTGCAGCAGCACCAGCAGTACCCGATGCCTGAGCTGGGCCGAGCACTGAGCGCTCCCCTGGCATC
CACCGCCCCCTCTGCCCCGCTGGGCAGTCTGACCGCTGCAGGCAGCTGCCACCATGCCATGCCCCACTCT
ACTCCCATTGCTGACATCCAGCAGGGCATCTCTAAGTACCTGGATGCCCTCAATGTCTTTTGCCGTGCTA
GTACGTTCCTCACAGATCTCTTCAGCACCGTGTTCAGGAACTCACACTACTCAAAGGCCGCCATGCAGCT
CAAAGATGTGCAGGAACATGTAATGGAAGCAGCCAGCAGATTGACCTCAGCCATAAAGCCCGAGATTGCC
AAGATGCTCATGGAACTCAGTGCTGGGGCTGCAAACTTCACAGATCAGAAGGAATTCAGTCTCCAGGACA
TTGAGGTGTTGGGGCGATGTTTCTTGACAGTGGTGCAAGTCCATTTCCAGTTTTTGACCCACGCCTTGCA
GAAAGTCCAGCCGGTGGCTCACTCTTGCTTTGCTGAGGTAGTTGTGCCAGAAAAAAAGAACAGCAGTCTG
TCTGGCATGGGCCACACACCTGAACTGGAGGAAGCTGTGCGATCCTGGCGAGGGGCAGCTGAGGCGACAT
CTAGATTGAGAGAGAGAGGCTGTGATGGATGCCTGGCAGGAATCGAAGTCCAACAACTCTTTTGTTCTCA
AAGTGCAGCAATTCCTGAGCACCAGCTAAAAGAGCTAAACATAAAAATCGACAGTGCTTTGCAGGCTTAT
AAAATAGCTTTGGAAAGCTTAGGCCACTGTGAATATGCAATGAAAGCTGGCTTCCATCTAAACCCAAAGG
CCATTGAAGCAAGTTTGCAGGGCTGCTGCAGTGAGGCGGAAGCTCAGCAGACAGGGCGAAGGCAGACACC
CCCACAGCCCATGCAGTGTGAGCTCCCCACGGTTCCTGTGCAGATAGGATCGCACTTCCTGAAGGGGGTC
TCCTTTAATGAGTCGGCTGCCGACAATCTGAAGCTTAAGACGCATACCATGTTACAGCTCATCAAGGAAG
CAGGCTGCTACAATGGAATCACACCTAGGGATGATCTTCCTGTGACTGAAGTCCTGAATCAGGTGTGCCC
GTCCATGTGGCGGGGTGCCTGTAAGACTGCTGTGCAGCTGCTGTTCGGCCAGGCAGGGCTGGTGGTTGTT
GACACAGCACAGATTGAAAATAAAGAAGCCTATGCACCCCAGATCAGTCTTGAAGGTTCCAGAATTGTGG
TTCAAGTCCCATCCACATGGTGCTTAAAGGAAGATCCTGCTACCATGTCCCTGCTGCAGAGGAGCCTGGA
TCCCGAGAAGACCCTAGGTCTGGTGGATGTGCTTTACACAGCCGTGCTAGACCTAAACCGCTGGAGAACA
GGGAGGGAACAAGCTTTACCCTGTATACAGATCCAGCTGCAAAGGGATATCTGCGATTTTGGGAATCAGG
CTGACCTGCCTTCTGGAAATGGAAGCAAATCCTCGGGACTGCAGAAGACTTTCTCCAAACTGACATCCCG
GTTCACAAAGAAAGTGTCATGCACCAACTCTGGCAGCACACACTATTCCAAAAACATCTTCACAGCTGGG
TGTTCAGAGGAAAGGGCCAAAATGATGGGCAATAATATTGATACACGGTTACAGAGCATTTTGAACATTG
GTAACTTCCCTAGGACTACAGACCCTTCACAGTCGTCTCAGAATTCCAGTAATCCAATGGTCAATGGCTT
TCTCCTGGAGAGACGTGAGAACTTCCTGCATGGGGATGATGGCAAGGATGAGAAGGGCATGAACTTACCC
ACTGATCAGGAAATGCAGGAAGTGATAGATTTTCTCTCAGGCTTTAACATGGGCCAGTCCCATCAGGGGT
CCCCACTGGTGACAAGGCGTAACTCTACTGCCACTGCCATGGTGACTGAACAGAAGACAGGAACCATGCA
ACCACAGCAGCCATCACTGCCATTGGCTCCTCCACTACGGCCACCCCAGGCTGGAGCACACACGCCTCTG
GCAGCCCAGCAAGGTCTGGCTCCTCAGCAGCAGTCTCCAAAGCAGCAGCAGCCCCAAGTCCAGTACTACC
AGCACCTGCTGCAACCCATTGGATCACAGCAGACTCCACCTCAGCCTCGGGCGCCTGCGAAATGGGTACA
TGGCTCATCTCAGCACCCATCACAGCCCATGGCAGCGGGTCTGTCTCCTCTTGGTCAGTGGCCTGGCATA
TCTGATCTCAGCTCTGACTTGTACAGCTTGGGTCTAGTGAGCAGCTATATGGACAATATGATGTCAGAAG
TTTTGGGACAGAAGCCCCAGGGACCTAGAAATAACACCTGGCCAAACCGTGACCAAAGTGATGGAGTCTT
TGGAATGCTGGGAGAGATTTTGCCTTTTGATCCTGCAGTGGGCTCAGACCCAGAATTCGCACGCTATGTG
GCAGGAGTGAGCCAGGCAATGCAGCAGAAGCGGCAAGCTCAACATGGCCGCCGGCCAGGCAACCCCCGTG
GCAACTGGCCGCCCATGGAAGACGCTCATCGGACCTGGCCTTTGCCAGAGTTCTTCACAGAAGGGGACAG
CTTGCACAGCGGCTGGTCAGGAGCTCAGGGAGACTCGGCCAGTTCCAGTGATGAGACCTCTTCAGCCAAT
GGGGACAGTCTGTTCTCCATGTTTTCAGGGCCTGACCTTGTTGCTGCTGTTAAACAGAGAAGGAAACACA
GCAGTGGAGAGCAGGAGACCAGCACACTGCCCTCACCACCTCTCCTGACCACAGTGGAGGACGTGAACCA
GGATAACAAAACCAAAACGTGGCCACCCAAAGCACCATGGCAGCACCCTTCCCCGATGCCCAGCACGCTG
CCCAGCCCAGCTGCACCACTCTATGCAGTCGCCAGTCCTGGCAGCCAGTGGAACGACACCGTGCAGATGC
TGCAGTCCCCTGTGTGGGCTGCAGCCAATGACTGCAATACCACCTCCTTCACCTATGTTCAGACACCACC
ACAGCCCCCACCTCCACCAGCACATAAGGCAGCACCCAAGGGCTTCAAGGCCTTCCCTGGGAAGGCTGAA
CGTAGGCCAGCCTATTTGCCCCAGTACTGA

Translation (1059 aa):
MYCCSAQDNKMDYKRRFLLGGSKQKVQQHQQYPMPELGRALSAPLASTAPSAPLGSLTAAGSCHHAMPHS
TPIADIQQGISKYLDALNVFCRASTFLTDLFSTVFRNSHYSKAAMQLKDVQEHVMEAASRLTSAIKPEIA
KMLMELSAGAANFTDQKEFSLQDIEVLGRCFLTVVQVHFQFLTHALQKVQPVAHSCFAEVVVPEKKNSSL
SGMGHTPELEEAVRSWRGAAEATSRLRERGCDGCLAGIEVQQLFCSQSAAIPEHQLKELNIKIDSALQAY
KIALESLGHCEYAMKAGFHLNPKAIEASLQGCCSEAEAQQTGRRQTPPQPMQCELPTVPVQIGSHFLKGV
SFNESAADNLKLKTHTMLQLIKEAGCYNGITPRDDLPVTEVLNQVCPSMWRGACKTAVQLLFGQAGLVVV
DTAQIENKEAYAPQISLEGSRIVVQVPSTWCLKEDPATMSLLQRSLDPEKTLGLVDVLYTAVLDLNRWRT
GREQALPCIQIQLQRDICDFGNQADLPSGNGSKSSGLQKTFSKLTSRFTKKVSCTNSGSTHYSKNIFTAG
CSEERAKMMGNNIDTRLQSILNIGNFPRTTDPSQSSQNSSNPMVNGFLLERRENFLHGDDGKDEKGMNLP
TDQEMQEVIDFLSGFNMGQSHQGSPLVTRRNSTATAMVTEQKTGTMQPQQPSLPLAPPLRPPQAGAHTPL
AAQQGLAPQQQSPKQQQPQVQYYQHLLQPIGSQQTPPQPRAPAKWVHGSSQHPSQPMAAGLSPLGQWPGI
SDLSSDLYSLGLVSSYMDNMMSEVLGQKPQGPRNNTWPNRDQSDGVFGMLGEILPFDPAVGSDPEFARYV
AGVSQAMQQKRQAQHGRRPGNPRGNWPPMEDAHRTWPLPEFFTEGDSLHSGWSGAQGDSASSSDETSSAN
GDSLFSMFSGPDLVAAVKQRRKHSSGEQETSTLPSPPLLTTVEDVNQDNKTKTWPPKAPWQHPSPMPSTL
PSPAAPLYAVASPGSQWNDTVQMLQSPVWAAANDCNTTSFTYVQTPPQPPPPPAHKAAPKGFKAFPGKAE
RRPAYLPQY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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