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Report for CCDS2728.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2728.1 Public Homo sapiens 3 LARS2 24 110 108 CCDS HistoryNCBI Gene:23395Re-query CCDS DB by CCDS ID:2728.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2728.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000645846.2 ENSP00000495093.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000645846.2Link to Ensembl Protein Viewer:ENSP00000495093.1Re-query CCDS DB by Nucleotide ID:ENST00000645846Re-query CCDS DB by Protein ID:ENSP00000495093
Original member Current member EBI ENST00000642274.1 ENSP00000495707.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000642274.1Link to Ensembl Protein Viewer:ENSP00000495707.1Re-query CCDS DB by Nucleotide ID:ENST00000642274Re-query CCDS DB by Protein ID:ENSP00000495707
Original member Current member EBI ENST00000650792.2 ENSP00000498867.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000650792.2Link to Ensembl Protein Viewer:ENSP00000498867.1Re-query CCDS DB by Nucleotide ID:ENST00000650792Re-query CCDS DB by Protein ID:ENSP00000498867
Original member Current member NCBI NM_001368263.1 NP_001355192.1 Accepted alive Link to Nucleotide Sequence:NM_001368263.1Link to Protein Sequence:NP_001355192.1Re-query CCDS DB by Nucleotide ID:NM_001368263Re-query CCDS DB by Protein ID:NP_001355192Link to BLAST:NP_001355192.1
Original member Current member NCBI NM_015340.4 NP_056155.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015340.4Link to Protein Sequence:NP_056155.1Re-query CCDS DB by Nucleotide ID:NM_015340Re-query CCDS DB by Protein ID:NP_056155Link to BLAST:NP_056155.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355192.1 903 Q15031 903 100% 0 0
NP_056155.1 903 Q15031 903 100% 0 0

Chromosomal Locations for CCDS 2728.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 45394454 45394687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45400245 45400373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45417482 45417573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45419669 45419729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45446891 45446980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45458743 45458886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45474243 45474350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45476468 45476627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45485692 45485796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45488697 45488812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45491517 45491800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45496275 45496373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45500442 45500579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45513135 45513235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45516094 45516276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45517903 45518072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45520219 45520296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45523997 45524108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45541829 45541956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45547351 45547530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2712 nt):
ATGGCTTCTGTTTGGCAGAGATTGGGTTTTTATGCCTCTCTTCTGAAAAGACAGCTAAATGGTGGGCCAG
ATGTCATCAAGTGGGAAAGGAGAGTAATTCCCGGATGTACCAGAAGCATCTACAGTGCCACGGGAAAGTG
GACAAAAGAGTATACATTGCAGACAAGAAAGGATGTTGAGAAATGGTGGCATCAACGAATAAAAGAACAG
GCCTCCAAAATTTCAGAAGCTGATAAATCGAAGCCAAAATTTTACGTGCTTTCCATGTTCCCTTATCCTT
CTGGTAAGCTGCACATGGGCCATGTGCGTGTCTACACCATCAGCGACACCATAGCACGGTTCCAGAAGAT
GAGAGGGATGCAGGTCATCAACCCCATGGGATGGGATGCTTTTGGATTGCCTGCTGAAAATGCCGCAGTC
GAGAGGAATCTACATCCACAAAGTTGGACACAAAGTAATATTAAACACATGAGGAAACAGCTTGATCGTC
TGGGCCTGTGTTTCAGCTGGGATAGGGAAATAACTACGTGTTTGCCAGATTACTACAAGTGGACTCAGTA
TCTCTTTATTAAACTGTATGAGGCTGGGCTGGCCTATCAAAAGGAGGCCCTGGTTAACTGGGACCCAGTG
GATCAAACAGTGCTTGCCAATGAGCAGGTGGATGAACATGGCTGTTCATGGCGTTCTGGAGCAAAGGTGG
AACAGAAGTACCTCAGACAATGGTTTATTAAGACAACCGCTTATGCAAAGGCCATGCAGGACGCGTTGGC
AGACCTTCCAGAATGGTATGGAATAAAAGGCATGCAAGCCCACTGGATTGGGGACTGTGTGGGCTGCCAC
CTGGACTTCACATTAAAGGTTCATGGGCAAGCCACGGGCGAAAAGCTGACTGCCTATACGGCCACCCCTG
AAGCCATTTATGGCACCTCCCACGTGGCCATCTCGCCCAGCCACAGACTCCTACATGGGCACAGCTCTCT
GAAGGAAGCCTTGAGGATGGCCCTTGTCCCTGGCAAAGATTGCCTCACGCCTGTAATGGCTGTGAACATG
CTTACCCAGCAGGAGGTCCCTGTCGTTATTTTGGCCAAAGCTGACTTGGAAGGCTCTCTGGATTCAAAAA
TAGGAATTCCCAGTACTAGCTCAGAGGACACCATCTTAGCCCAAACCCTGGGCCTGGCCTACTCTGAAGT
CATTGAAACTTTGCCAGATGGCACAGAGAGACTGAGCAGCTCTGCTGAGTTCACAGGTATGACCCGGCAG
GATGCTTTTCTAGCCCTGACTCAGAAAGCCCGGGGGAAGAGAGTGGGTGGAGACGTGACAAGTGATAAAC
TGAAAGACTGGCTGATTTCACGGCAGCGGTACTGGGGCACACCAATCCCCATTGTCCACTGCCCAGTCTG
TGGCCCCACACCTGTGCCCCTGGAGGACTTGCCTGTGACCCTGCCCAACATCGCGTCTTTCACTGGCAAG
GGAGGCCCCCCACTGGCCATGGCTTCAGAGTGGGTGAACTGCTCCTGCCCAAGGTGCAAGGGAGCAGCCA
AGAGAGAGACAGACACGATGGATACCTTTGTTGATTCTGCTTGGTACTACTTCAGATACACTGACCCTCA
TAATCCACACAGCCCTTTTAACACAGCAGTGGCCGATTACTGGATGCCTGTGGATTTGTACATTGGAGGG
AAAGAACATGCCGTCATGCACTTGTTCTATGCAAGATTCTTTAGTCATTTTTGCCATGATCAAAAAATGG
TTAAACATAGGGAGCCTTTTCATAAGCTGCTGGCCCAAGGCCTTATCAAGGGGCAGACATTCCGCCTACC
ATCTGGACAGTATCTACAGAGAGAGGAAGTGGATCTCACAGGTTCCGTTCCTGTTCATGCAAAAACGAAA
GAGAAGTTAGAGGTGACGTGGGAGAAGATGAGTAAGTCCAAACACAACGGGGTGGACCCAGAGGAAGTTG
TGGAGCAGTATGGGATCGACACGATTCGGCTCTACATCCTTTTTGCTGCCCCTCCTGAGAAGGATATCTT
GTGGGATGTGAAAACTGATGCTCTCCCTGGGGTGCTGAGATGGCAACAACGACTGTGGACCTTGACAACT
CGGTTTATTGAGGCCAGGGCTTCTGGGAAGTCTCCCCAGCCTCAGCTGCTGAGTAACAAGGAGAAAGCTG
AGGCCAGGAAGCTCTGGGAGTACAAGAACTCCGTCATCTCTCAGGTGACCACCCATTTCACAGAGGACTT
CTCACTGAATTCTGCAATTTCTCAGCTGATGGGACTCAGCAATGCCCTCTCGCAAGCCTCTCAGAGCGTC
ATTCTCCACAGCCCCGAGTTTGAGGATGCTTTGTGTGCCCTGATGGTAATGGCTGCTCCACTGGCCCCTC
ATGTAACCTCAGAGATCTGGGCAGGCCTGGCGCTGGTGCCGAGGAAGCTCTGTGCCCACTACACTTGGGA
TGCCAGTGTGCTGCTCCAGGCATGGCCTGCTGTGGACCCGGAGTTCCTGCAGCAGCCTGAGGTTGTCCAG
ATGGCAGTTCTGATCAACAATAAAGCTTGTGGCAAAATTCCTGTGCCCCAACAAGTTGCCCGGGACCAGG
ACAAAGTCCACGAATTTGTTCTTCAAAGCGAGCTGGGTGTCAGGCTTTTGCAAGGACGAAGCATCAAGAA
GTCCTTCCTTTCCCCGAGAACTGCCCTCATCAACTTCCTGGTGCAAGATTGA

Translation (903 aa):
MASVWQRLGFYASLLKRQLNGGPDVIKWERRVIPGCTRSIYSATGKWTKEYTLQTRKDVEKWWHQRIKEQ
ASKISEADKSKPKFYVLSMFPYPSGKLHMGHVRVYTISDTIARFQKMRGMQVINPMGWDAFGLPAENAAV
ERNLHPQSWTQSNIKHMRKQLDRLGLCFSWDREITTCLPDYYKWTQYLFIKLYEAGLAYQKEALVNWDPV
DQTVLANEQVDEHGCSWRSGAKVEQKYLRQWFIKTTAYAKAMQDALADLPEWYGIKGMQAHWIGDCVGCH
LDFTLKVHGQATGEKLTAYTATPEAIYGTSHVAISPSHRLLHGHSSLKEALRMALVPGKDCLTPVMAVNM
LTQQEVPVVILAKADLEGSLDSKIGIPSTSSEDTILAQTLGLAYSEVIETLPDGTERLSSSAEFTGMTRQ
DAFLALTQKARGKRVGGDVTSDKLKDWLISRQRYWGTPIPIVHCPVCGPTPVPLEDLPVTLPNIASFTGK
GGPPLAMASEWVNCSCPRCKGAAKRETDTMDTFVDSAWYYFRYTDPHNPHSPFNTAVADYWMPVDLYIGG
KEHAVMHLFYARFFSHFCHDQKMVKHREPFHKLLAQGLIKGQTFRLPSGQYLQREEVDLTGSVPVHAKTK
EKLEVTWEKMSKSKHNGVDPEEVVEQYGIDTIRLYILFAAPPEKDILWDVKTDALPGVLRWQQRLWTLTT
RFIEARASGKSPQPQLLSNKEKAEARKLWEYKNSVISQVTTHFTEDFSLNSAISQLMGLSNALSQASQSV
ILHSPEFEDALCALMVMAAPLAPHVTSEIWAGLALVPRKLCAHYTWDASVLLQAWPAVDPEFLQQPEVVQ
MAVLINNKACGKIPVPQQVARDQDKVHEFVLQSELGVRLLQGRSIKKSFLSPRTALINFLVQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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