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Report for CCDS22834.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22834.1 Public Mus musculus 9 Med17 23 108 98 CCDS HistoryNCBI Gene:234959Re-query CCDS DB by CCDS ID:22834.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22834.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034411.9 ENSMUSP00000034411.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034411.9Link to Ensembl Protein Viewer:ENSMUSP00000034411.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034411Re-query CCDS DB by Protein ID:ENSMUSP00000034411
Original member Current member NCBI NM_144933.2 NP_659182.1 Accepted alive Link to Nucleotide Sequence:NM_144933.2Link to Protein Sequence:NP_659182.1Re-query CCDS DB by Nucleotide ID:NM_144933Re-query CCDS DB by Protein ID:NP_659182Link to BLAST:NP_659182.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659182.1 649 Q8VCD5 649 100% 0 0

Chromosomal Locations for CCDS 22834.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 15262227 15262438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15263604 15263763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15265352 15265469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15267414 15267551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15270343 15270527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15271611 15271741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15272507 15272659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15274285 15274369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15274449 15274585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15275846 15276065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15277557 15277723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15279550 15279793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1950 nt):
ATGTCGGGCGTGCGAGCCGTGCGCATCAGCATCGAGTCGGCCTGCGAGAAGCAGGTGCAGGAGGTGGGCC
TTGATGGCACCGAGACGTACCTGCAGCCGCTGTCCATGTCGCAGAACCTGGCGCGCCTGGCACAGCGCAT
CGACTTCAGCCAGGGCTCTGGCTCTGAGGAGGAGGAGGCGGCAGGGCCTGACGGCGATGCGCCGGACTGG
GGGGGCGCGGGAGCCGACCAGGACGACGAGGAGGGGTTGGTAAAATTCCAACCTTCTTTGTGGCCTTGGG
ACTCTGTGAGGAACAATTTGCGAAGTGCCCTTACAGAGATGTGTGTTCTCTATGATGTCCTCAGTATTGT
CAGGGACAAAAAGTTCATGACTCTGGACCCCGTCTCTCAGGATGCTCTTCCTCCCAAACAGAGTCCACAA
ACGCTGCAGCTGATCTCCAAGAAGAAGTCCCTCGCTGGAGCAGCTCAGATCCTACTGAAGGGGGCAGAAA
GACTGACCAAGTCAGTGGCTGAGAACCAGGAAAACAAGCTCCAGCGAGACTTCAATTCTGAGCTCCTGAG
ACTCCGGCAGCACTGGAAGCTGAGGAAGGTGGGCGACAAGATCCTGGGTGACCTGAGCTACAGAAGTGCA
GGTTCTCTCTTTCCTCATCATGGTACCTTTGAAGTGATAAAGAATACAGACATTGACTTGGATAAGAAGA
TACCAGAAGATTACTGTCCTCTGGATGTCCAAATTCCTAGTGATTTAGAGGGGTCTGCGTATATCAAGGT
TTCTATTCAGAAACAGGCTCCAGACATTGGTGATCTTGGCACAGTTAACCTTTTTAAGAGACCTTTGCCC
AAATCCAAGCCAGGTTCCCCACACTGGCAGACAAAATTAGAAGCAGCACAAAATGTTCTTCTTTGTAAAG
AAATTTTTGCACAGCTCTCCCGGGAAGCCGTTCAGATTAAGTCTCAGATCCCTCACATTGTGGTGAAAAA
CCAGATCATCTCTCAGCCCTTTCCAAGCTTGCAGTTGTCCATTTCTCTGTGCCACTCCTCAGATGATAAG
AAGTCGCAGAAGTGTGCCGCAGAGAAGCCTGGGCAAGAGGATCACCTCTACGTCCTGGAGCACAACCTGC
ACCTGCTGATCAGAGAGTTTCATAAACAGACCTTGAGTTCCATTGTGATGCCACACCCAGCAAGTGCTCC
CTTTGGCCACAAGAGGATGAGACTCTCAGGTCCTCAAGCTTTTGATAAAAATGAAATTAATTCAATACAG
TCCACAGAAGGACTCCTAGAAAAAATAATTAAACAGGCAAAGCATATTTTTCTAAGGAGCAGAACTGCTG
CAACCATTGACAGCTTGGCAAGTCGCATTGAGGACCCCCAGATCCAGGCCCACTGGTCAAACATCAATGA
TGTGTATGAGTCTAGTGTAAAAGTTTTGATCACATCTCAGGGTTATGAACAGATCTGCAAGTCCATCCAG
CTGCAGTTGAACATTGGTGTGGAGCAGGTCCGTGTTGTGCACAGAGATGGTCGGGTAATCATGTTGTCTC
ATCAGGAGCAGGAGCTACAGGACTTCCTTCTGTCTCAGATGTCACAGCACCAGGTGCACGCGGTTCAGCA
GCTTGCCAAGGTTATGGGCTGGCAGGTCCTCAGCTTCAGTAACCATGTGGGACTTGGGCCCATAGAGAGC
ATTGGCAATGCTTCGGCCATCACCGTGGCCTCGCCAAGTGGAGACTATGCGATTTCAGTTCGTAACGGAC
CTGAGAGTGGCAGCAAGATTATGGTTCAGTTTCCCCGTAACCAGTGCAAAGACCTTCCGAAGAGTGATGT
TTTACAAGACAGCAAGTGGAGTCATCTCCGAGGACCATTCAAGGAGGTTCAGTGGAACAAGATGGAAGGC
CGAAACTTCGTTTATAAAATGGAGCTGCTTATGTCTGCCCTGAGCCCCTGTCTGCTGTGA

Translation (649 aa):
MSGVRAVRISIESACEKQVQEVGLDGTETYLQPLSMSQNLARLAQRIDFSQGSGSEEEEAAGPDGDAPDW
GGAGADQDDEEGLVKFQPSLWPWDSVRNNLRSALTEMCVLYDVLSIVRDKKFMTLDPVSQDALPPKQSPQ
TLQLISKKKSLAGAAQILLKGAERLTKSVAENQENKLQRDFNSELLRLRQHWKLRKVGDKILGDLSYRSA
GSLFPHHGTFEVIKNTDIDLDKKIPEDYCPLDVQIPSDLEGSAYIKVSIQKQAPDIGDLGTVNLFKRPLP
KSKPGSPHWQTKLEAAQNVLLCKEIFAQLSREAVQIKSQIPHIVVKNQIISQPFPSLQLSISLCHSSDDK
KSQKCAAEKPGQEDHLYVLEHNLHLLIREFHKQTLSSIVMPHPASAPFGHKRMRLSGPQAFDKNEINSIQ
STEGLLEKIIKQAKHIFLRSRTAATIDSLASRIEDPQIQAHWSNINDVYESSVKVLITSQGYEQICKSIQ
LQLNIGVEQVRVVHRDGRVIMLSHQEQELQDFLLSQMSQHQVHAVQQLAKVMGWQVLSFSNHVGLGPIES
IGNASAITVASPSGDYAISVRNGPESGSKIMVQFPRNQCKDLPKSDVLQDSKWSHLRGPFKEVQWNKMEG
RNFVYKMELLMSALSPCLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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