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Report for CCDS54076.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54076.1 Public Homo sapiens 17 RPAIN 24 110 108 CCDS HistoryNCBI Gene:84268Re-query CCDS DB by CCDS ID:54076.1Re-query CCDS DB by GeneID:84268See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54076.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381208.9 ENSP00000370605.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381208.9Link to Ensembl Protein Viewer:ENSP00000370605.5Re-query CCDS DB by Nucleotide ID:ENST00000381208Re-query CCDS DB by Protein ID:ENSP00000370605
Original member Current member NCBI NM_001160244.2 NP_001153716.1 Accepted alive Link to Nucleotide Sequence:NM_001160244.2Link to Protein Sequence:NP_001153716.1Re-query CCDS DB by Nucleotide ID:NM_001160244Re-query CCDS DB by Protein ID:NP_001153716Link to BLAST:NP_001153716.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153716.1 172 Q86UA6-2 172 100% 0 0

Chromosomal Locations for CCDS 54076.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 5420211 5420291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 5421296 5421466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 5422769 5422829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 5425971 5426082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 5426236 5426299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 5432542 5432571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGGCGGAGTCGTTGAGGTCTCCGCGCCGCTCCCTGTACAAACTGGTGGGCTCGCCGCCTTGGAAAGAGG
CTTTCCGGCAGAGATGCCTGGAGAGAATGAGAAACAGCCGGGACAGGCTCCTAAACAGGTACCGCCAGGC
TGGAAGCAGTGGGCCAGGGAATTCTCAGAACAGCTTTCTAGTTCAAGAGGTGATGGAAGAAGAGTGGAAT
GCTTTGCAGTCAGTGGAGAATTGTCCAGAAGACTTGGCTCAGCTGGAGGAGCTGATAGACATGGCTGTGC
TGGAGGAAATTCAACAGGAGCTGATCAACCAAGAGCAGTCCATCATCAGCGAGTATGAGAAGAGCTTGCA
GTTTGATGAAAAGTGTCTCAGCATCATGCTGGCTGAGTGGGAGGCAAACCCACTCATCTGTCCTGTATGT
ACAAAGTACAACCTGAGAATCACAAGCGGTGTGGTGGTGTGTCAGTGTGGCCTGTCCATCCCATCTCATG
CCTGTGATACTTGGGCTGTGATCCTCTAG

Translation (172 aa):
MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWN
ALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDEKCLSIMLAEWEANPLICPVC
TKYNLRITSGVVVCQCGLSIPSHACDTWAVIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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