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Report for CCDS25290.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25290.2 Public Mus musculus 11 Ttll6 23 108 98 CCDS HistoryNCBI Gene:237930Re-query CCDS DB by CCDS ID:25290.2See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 25290.2
The coding region has been updated to represent an alternative splicing pattern, resulting in an extended N-terminus that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 25290.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167258.7 ENSMUSP00000127778.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167258.7Link to Ensembl Protein Viewer:ENSMUSP00000127778.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167258Re-query CCDS DB by Protein ID:ENSMUSP00000127778
Original member NCBI NM_172799.4 NP_766387.2 Updated not alive Link to Nucleotide Sequence:NM_172799.4Link to Protein Sequence:NP_766387.2Re-query CCDS DB by Nucleotide ID:NM_172799Re-query CCDS DB by Protein ID:NP_766387
Current member NCBI NM_172799.5 NP_766387.2 Accepted alive Link to Nucleotide Sequence:NM_172799.5Link to Protein Sequence:NP_766387.2Re-query CCDS DB by Nucleotide ID:NM_172799Re-query CCDS DB by Protein ID:NP_766387Link to BLAST:NP_766387.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766387.2 822 A4Q9E8-1 822 100% 0 0

Chromosomal Locations for CCDS 25290.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 96133786 96133961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96134871 96134908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96135485 96135603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96135725 96135855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96138727 96138883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96139630 96139773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96140432 96140517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96145398 96145623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96147405 96147580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96151883 96152071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96153064 96153241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96154579 96154854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96156473 96156806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96158688 96158926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2469 nt):
ATGCTACAGTGCCTGACTTCGGAAAGTGAGGAAGGGGCTGAAGAGAGGGAGGAGAGTTCCACAGAAGATC
TGGAGGAGCTAAAAGAATTTGTCACCCTGGCTTTTGTGAGAGAGAACACACAAAAGAGGCTCCAGAACGC
ACAGCAGCATGGTAAGAAAAAGAGGAAGAAAAAAAGATTGGTGATCAATCTATCTAACTGCCGGTATGAC
AGCGTGCGCAGGGCCGCCCAGCAATATGGCCTTCGAGAGGCGGGTGACAATGATGACTGGACTCTCTATT
GGACCGACTACTCAGTGTCACTGGAGCGAGTGATGGAAATGAAGAGCTACCAGAAAATCAATCATTTTCC
TGGGATGAGTGAGATCTGCCGCAAGGACTTGCTGGCCCGGAATATGAGCCGCATGCTAAAGCTGTTTCCT
AAGGATTTCCACTTCTTCCCCAGGACTTGGTGTCTTCCTGCCGACTGGGGAGATTTGCAGACTTACAGCA
GGACAAGAAAAAATAAGACTTACATTTGTAAGCCGGACTCGGGCTGCCAAGGGAGAGGCATATTCATTAC
CCGGTCGGTGAAAGAAATCAAGCCAGGGGAGGATATGATCTGCCAGCTTTATATCTCAAAGCCCTTCATC
ATCGACGGGTTCAAGTTTGACCTTCGGGTTTATGTGCTGGTGACCTCCTGTGACCCTCTCAGGGTTTTTG
TGTACAATGAAGGACTGGCTCGCTTTGCCACCACCTCTTACTCCCACCCTAACCTAGACAACCTGGATGA
GATCTGTATGCACCTGACTAATTATTCTATCAATAAGCACAGTTCCAACTTCGTTCAAGACGCTTTTTCT
GGCAGCAAGAGGAAACTCTCCACCTTCAACTCGTACATGAAGACCCACGGCTACGACGTGGAGCAGATCT
GGAGGGGCATCGAGGACGTCATCATCAAGACGCTCATATCCGCTCACCCGGTCATCAAACACAATTACCA
TACCTGCTTCCCCAGCCACACGCTCAACAGTGCCTGCTTTGAAATCCTGGGCTTTGACATCTTGTTGGAC
CGGAAACTCAAACCCTGGCTGCTGGAGGTCAACCATTCTCCAAGCTTCTCCACTGACTCCAAGTTGGATA
AAGAGGTGAAAGACAGCCTGCTCTATGATGCATTGGTCCTCATCAACCTGGGGAACTGTGACAAAAAGAA
AGTCTTGGAGGAGGAGAGACAGCGGGGACGATTCTTGCAGCAGTGTCCAAATCGGGAGATCAGGCTAGAG
GAAGTCAAGGGTTTCCAGGCCATGAGGTTACAGAAAACAGAGGAATATGAGAAGAAAAACTGTGGGGGCT
TCCGGCTCATCTACCCTGGTCTGAATTTGGAGAAGTATGACAAGTTTTTCCAGGACAACAGCTCCCTCTT
CCAGAACACCGTTGCTTCCAGAGCCCGGGAGCTGTATGCACGGCAGCTGATCCAGGAGCTGAGGCAGAAA
CAGGAAAAAAAAGTCTTCCTAAAAAAAGCGAGGAAGGAAGAGACGCAGGGCGAGTCTGCGGGTGAGCAGG
CAAGAGACAAAGTCGTGCGGCTCCAGCGACAGAGACAGCAGCCCAAGTGCAAGACGGTGGCCACCTGTCC
CCCCAAACAATCCTTACATCCAGTGACCTTAGTATCCTGCACATCTGGCTTGCTCTTGAACATCAGAGGC
CTAAAGAAAGGTGAAATTTCTGAGAGCCTCGAACAGAAGGACACCAAGGAGGCCATGCTTATACCCTGCA
AGCCCGTGTCGGCAAGGAACTACAGTTCTGTCCCTGACCTGAGGAGTGCAAACCCCAGCTGCTTCGAGCC
AGAGTTCCATGTGCCCAATGCCAAAGTCAAGGAAGTCAAGTCGGCCTTTATGGTGAACATAGAGAGCACT
GCCCAGCCCATAACGTCTGTAGAAAGTTCCCGAGATGCCACAGCCCCCATCTCAACCTCTCTAGAATCCC
TGGCAAGCATGAGCCTCTCCACCAGCCCTGAGTGCAGCAGCCCGGAGAGTGTCCATATGGTGTCCTATAA
CCACAAGCAGCAGAAGGCTTCCTTCCACAAGCCGATGCAGGAGAAGAAATCCAAGCCTCTCATGTTTTCC
AAATCCAGGCATTTGGACCTGAACTGTACCTCAATGAAGAATGACATTAATAGGCAGTATCTGATGTCAG
AGATACTGCAGAAGGTTCAAATGAAGAAGAAACGCCCCTTGTTCCCGGCTCCCAAGTCACAATACCCAAC
CCTGTCCAAGGAGCGGTGCCCCCACAGCCGCAGCTCCAGCAGGAAGAAAGAGATGAATTCGCCCTCCGTC
TTCGTCCTGCAGGCTTCTCACAGCCGTGCTGAATCTCTGAATGACCTTCTGGTAGTTGCCACTCAAGCTC
GCCTGGACCCTCGGCCCAGCAGAAGCCATTCGGGCACTACGACAAGGGACTCCAGCACACAGGACCCAAA
GCACACTGCCACTGCCTGA

Translation (822 aa):
MLQCLTSESEEGAEEREESSTEDLEELKEFVTLAFVRENTQKRLQNAQQHGKKKRKKKRLVINLSNCRYD
SVRRAAQQYGLREAGDNDDWTLYWTDYSVSLERVMEMKSYQKINHFPGMSEICRKDLLARNMSRMLKLFP
KDFHFFPRTWCLPADWGDLQTYSRTRKNKTYICKPDSGCQGRGIFITRSVKEIKPGEDMICQLYISKPFI
IDGFKFDLRVYVLVTSCDPLRVFVYNEGLARFATTSYSHPNLDNLDEICMHLTNYSINKHSSNFVQDAFS
GSKRKLSTFNSYMKTHGYDVEQIWRGIEDVIIKTLISAHPVIKHNYHTCFPSHTLNSACFEILGFDILLD
RKLKPWLLEVNHSPSFSTDSKLDKEVKDSLLYDALVLINLGNCDKKKVLEEERQRGRFLQQCPNREIRLE
EVKGFQAMRLQKTEEYEKKNCGGFRLIYPGLNLEKYDKFFQDNSSLFQNTVASRARELYARQLIQELRQK
QEKKVFLKKARKEETQGESAGEQARDKVVRLQRQRQQPKCKTVATCPPKQSLHPVTLVSCTSGLLLNIRG
LKKGEISESLEQKDTKEAMLIPCKPVSARNYSSVPDLRSANPSCFEPEFHVPNAKVKEVKSAFMVNIEST
AQPITSVESSRDATAPISTSLESLASMSLSTSPECSSPESVHMVSYNHKQQKASFHKPMQEKKSKPLMFS
KSRHLDLNCTSMKNDINRQYLMSEILQKVQMKKKRPLFPAPKSQYPTLSKERCPHSRSSSRKKEMNSPSV
FVLQASHSRAESLNDLLVVATQARLDPRPSRSHSGTTTRDSSTQDPKHTATA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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