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Report for CCDS25813.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25813.1 Public Mus musculus 12 Kcns3 23 108 98 CCDS HistoryNCBI Gene:238076Re-query CCDS DB by CCDS ID:25813.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25813.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055673.1 ENSMUSP00000060706.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055673.1Link to Ensembl Protein Viewer:ENSMUSP00000060706.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000055673Re-query CCDS DB by Protein ID:ENSMUSP00000060706
Original member Current member EBI ENSMUST00000164495.8 ENSMUSP00000129412.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164495.8Link to Ensembl Protein Viewer:ENSMUSP00000129412.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164495Re-query CCDS DB by Protein ID:ENSMUSP00000129412
Original member Current member EBI ENSMUST00000217974.1 ENSMUSP00000152026.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217974.1Link to Ensembl Protein Viewer:ENSMUSP00000152026.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217974Re-query CCDS DB by Protein ID:ENSMUSP00000152026
Original member NCBI NM_001168564.1 NP_001162036.1 Updated not alive Link to Nucleotide Sequence:NM_001168564.1Link to Protein Sequence:NP_001162036.1Re-query CCDS DB by Nucleotide ID:NM_001168564Re-query CCDS DB by Protein ID:NP_001162036
Current member NCBI NM_001168564.2 NP_001162036.1 Accepted alive Link to Nucleotide Sequence:NM_001168564.2Link to Protein Sequence:NP_001162036.1Re-query CCDS DB by Nucleotide ID:NM_001168564Re-query CCDS DB by Protein ID:NP_001162036Link to BLAST:NP_001162036.1
Original member NCBI NM_173417.3 NP_775593.1 Updated not alive Link to Nucleotide Sequence:NM_173417.3Link to Protein Sequence:NP_775593.1Re-query CCDS DB by Nucleotide ID:NM_173417Re-query CCDS DB by Protein ID:NP_775593
Current member NCBI NM_173417.4 NP_775593.1 Accepted alive Link to Nucleotide Sequence:NM_173417.4Link to Protein Sequence:NP_775593.1Re-query CCDS DB by Nucleotide ID:NM_173417Re-query CCDS DB by Protein ID:NP_775593Link to BLAST:NP_775593.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001162036.1 491 Q8BQZ8 491 100% 0 0
NP_775593.1 491 Q8BQZ8 491 100% 0 0

Chromosomal Locations for CCDS 25813.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 11091221 11092696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1476 nt):
ATGGTGTTTGGTGAGTTTTTCCATCGCCCTGGACAAGATGAGGAACTTGTCAACTTGAACGTGGGGGGCT
TTAAGCAGTCTGTGGATCAAAGTACACTCCTGCGGTTCCCTCACACACGACTGGGAAAGCTGCTTACCTG
CCACTCTGAGGAGGCCATTCTGGAGCTGTGTGATGACTACAGCGTGGCAGATAAAGAGTACTACTTTGAT
CGGAACCCCTTCCTGTTCAGATACGTCTTGAACTTTTATTACACAGGGAAGCTGCATGTGATGGAGGAAC
TGTGTGTCTTCTCCTTCTGCCAGGAGATCGAGTACTGGGGCATCAATGAGCTCTTCATTGACTCCTGCTG
TAGCAGTCGGTACCAGGAGCGCAAGGAGGAGAGCCACGACAAGGACTGGGACCAGAAAAGCAACGATGTG
AGCACAGACTCCTCCTTTGAAGAATCGTCTCTGTTTGAGAAAGAGCTGGAGAAGTTTGATGAGCTGAGAT
TTGGTCAGCTCCGAAAGAAGATCTGGATTCGAATGGAAAATCCAGCTTACTGCCTGTCGGCCAAGCTCAT
TGCCATCTCCTCCTTGAGCGTGGTGCTGGCTTCCATAGTGGCCATGTGTGTGCACAGCATGTCGGAATTC
CAGAACGAGGATGGAGAAGTGGATGACCCTGTGCTGGAAGGTGTGGAGATTGCCTGCATTGCATGGTTTA
CTGGTGAGCTAGCCATCAGGCTGGTTGCTGCTCCATCACAAAAGAAGTTCTGGAAAAACCCTCTGAACAT
CATTGACTTTGTTTCTATCATTCCCTTCTATGCCACGTTGGCTGTGGACACCAAGGAAGAAGAGAGTGAG
GACATTGAGAATATGGGCAAGGTGGTCCAGATCCTTCGGCTCATGAGGATTTTCCGAATTCTGAAGCTTG
CCCGGCACTCTGTAGGGCTTCGGTCTCTTGGGGCCACACTGAGGCACAGTTACCATGAGGTGGGGCTACT
GCTTCTCTTCCTTTCTGTGGGCATCTCCATCTTCTCTGTGCTTATCTACTCTGTGGAGAAAGATGAACAC
AAGTCCAGTCTCACCAGCATCCCCATCTGCTGGTGGTGGGCCACTATCAGTATGACCACAGTGGGCTATG
GAGACACCCACCCAGTCACCTTAGCTGGGAAAATCATTGCAAGCACATGTATTATCTGTGGAATCTTAGT
GGTAGCCCTCCCCATTACCATCATCTTCAACAAGTTTTCCAAGTACTACCAGAAGCAGAAAGACATGGAA
GTGGACCAGTGCAGCGAGGACCCACCAGAGAAGTGCCATGAGCTACCGTACTTTAACATTAGGGACGTTT
ATGCACAGCAAGTACATGCCTTCATCACCAGTCTGTCTTCCATTGGCATCGTGGTCAGTGATCCTGACTC
CACAGATGCTTCGAGCGTTGAAGACAATGAGGATGCTTACAACACTGCATCCCTGGAGAACTGTACTGGA
AAATGA

Translation (491 aa):
MVFGEFFHRPGQDEELVNLNVGGFKQSVDQSTLLRFPHTRLGKLLTCHSEEAILELCDDYSVADKEYYFD
RNPFLFRYVLNFYYTGKLHVMEELCVFSFCQEIEYWGINELFIDSCCSSRYQERKEESHDKDWDQKSNDV
STDSSFEESSLFEKELEKFDELRFGQLRKKIWIRMENPAYCLSAKLIAISSLSVVLASIVAMCVHSMSEF
QNEDGEVDDPVLEGVEIACIAWFTGELAIRLVAAPSQKKFWKNPLNIIDFVSIIPFYATLAVDTKEEESE
DIENMGKVVQILRLMRIFRILKLARHSVGLRSLGATLRHSYHEVGLLLLFLSVGISIFSVLIYSVEKDEH
KSSLTSIPICWWWATISMTTVGYGDTHPVTLAGKIIASTCIICGILVVALPITIIFNKFSKYYQKQKDME
VDQCSEDPPEKCHELPYFNIRDVYAQQVHAFITSLSSIGIVVSDPDSTDASSVEDNEDAYNTASLENCTG
K


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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