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Report for CCDS48409.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48409.1 Public Mus musculus 1 Pappa2 23 108 98 CCDS HistoryNCBI Gene:23850Re-query CCDS DB by CCDS ID:48409.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48409.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159861.8 ENSMUSP00000124022.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159861.8Link to Ensembl Protein Viewer:ENSMUSP00000124022.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000159861Re-query CCDS DB by Protein ID:ENSMUSP00000124022
Original member Current member NCBI NM_001085376.3 NP_001078845.1 Accepted alive Link to Nucleotide Sequence:NM_001085376.3Link to Protein Sequence:NP_001078845.1Re-query CCDS DB by Nucleotide ID:NM_001085376Re-query CCDS DB by Protein ID:NP_001078845Link to BLAST:NP_001078845.1

Chromosomal Locations for CCDS 48409.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 158714946 158715020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158716962 158717060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158750530 158750601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158761530 158761639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158763069 158763204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158764928 158765096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158782181 158782394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158783897 158784074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158787590 158787761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158814340 158814547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158814737 158814872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158832709 158832855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158834750 158834943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158838549 158838640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158845004 158845132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158847936 158848425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158851096 158851217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158854850 158855042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158857134 158857427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158871402 158871547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158935946 158937017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158956517 158957438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5370 nt):
ATGATGTGTTGGAAGGTCCTGAGAATAAGCCTGGTGGTCCTGACTGGGTGGGCACTCAGTACCACCAACT
CAGAGCAGGGCTGGACACGCAAGAAATTCCTGGCCCAGAAGGAACACCTGAACCAAGTGCTGTTGGAAGG
GGAACGCTGTTGGCTGGGGTATAAGGTTCGAAGACCCAGGACTGCTCCACAGCACCATCTCTTTGGGGTC
TACCCAAGCCGCCTCGAAAACTACCCAAGGTCCTATCCTGTGGGGACACAGCAGCAAACCCTGTATGCAG
AATGGAGTCAGCGAAGCCCAGAGAGACAGGCTCCGAGTGGTATTCCCCGAGACCTGACTGAAAACCCAGC
AGGAGCAAGGAGAGAGTCTCAGCAGCCAGCTGCCCCGTGGGTAGGGGATGGTCCTATTGGGCAATCGCAG
CTGCTGAGAAATGATGACACTTATCTTGGCGAGGGAGGATCTAAGGAGGCTCTAGGTGAGCCTGCGATTC
AGGGAAGCTCAGAAATTGCTGTCTCCACCATTGCTACCTTCGCATATCAGAAGGGACCCACAGCAGAGAC
CCAGAGGAAGGGCCAGTCCAAGTCTAGGCTTCCTCGCCAAGTGCAGAAGAGGCAGGCAGAAGACATGACT
GGAGACCCCCAGAATACCCCTCAAGGTTTCCAGCTTTGGCCTAAAGAGCCACTTAAGCATGGAGATAGTG
ACAGTCCATTGGAGGGCACCATCCAAAATGGTGGAGGGGCCTCTCTCCGGAGAGTAGAGACCTTTAACTC
CCAAGGAGGATTGCCTGTACTGTATTTCACTGGGAAGAGGGAGCGGCTGTTGCTGCGTCCAGAAGTGCTG
GCTGAGATTCCCCGGGAGGCGTTCACAGTGGAAGCCTGGGTGAGACCAGAGGGAGGACAGAGCAACCCAG
CCATCATTGCAGGTGTGTTTGATAACTGCTCCCACACAGTCAATGACAAGGGCTGGGCCCTGGGGATCCG
CTCAGGGAAGGACAAGGGGTGGAGAGATGCTCGCTTCTTCTTTTCCCTCCGCACTGACCGGATGAAGAAA
GCCACTATTGTGACTGGCCACAGCCGTTACCAGCCAGGCATGTGGACTCATGTAGCAGCCACTTACGATG
GACAGCATACAGCTCTGTATGTGGATGGCACTCGAGTGGCTAGTAGTCGTGACCAGTTTGGACCGCTAAA
TAGCCCTTTCATGGCGTCTTGCCGCTCTTTAATCCTGGGAGGGGACAGCTCCGAGGATGGACATTATTTC
CGTGGTTACCTGGGCACACTGGTAATCTGGTCGACCGCCCTTTCACAAACCCACCTCCAGCACAGTCCCC
TGCATCCAAGTGCAGCAGATGAGTTGACCACCCTGATCCTGACAGCCACTTTCGATCCTCTGATGGAACA
GTGGGCTCCATTTAGAGATGACTTATATCCCCGGCTGGAGGTTCTCCAGGACTCTGAGTCACAGCCTGAG
ATTCTGTCACCTTTACAACCCCCACCTTGTGGGCAAACAGCTTGTGACAATGTGGAACTCATCTCCCAGT
ACAATAAGCATGGGCCCCTTCGTAGAGAGAAAGTGATCCGCTACCAGGTGGTAAACATCTATGATGATGA
GGGTCTGCATCCCATTGTGAGTGATCATCAGATCCGCCGTCAGCATGAGGCCCTCAACCAGGCCTTCAGC
CGCTACAATATCAGCTGGCAGCTGAGTGTCCACCGAGTCCACAACTCCACCCTGCGCCACCGGGTTGTGC
TTGTTAATTGTGAGCCCAGCAAGATTGGCAATGACCACTGTGACCCTGAATGTGAGCATCCACTCACCGG
CTTCGATGGGGGCGATTGCCGCCTGCAGGGACGCTGCTACTCCTGGAATCGCAGGGATGGCCTCTGTCAC
GTGGAGTGCAACAACATGCTGAATGACTTCGATGATGGAGACTGCTGCGATCCGGAAGTGACTGATGTCC
GAAAGACTTGCTTTGATCCTGACTCACCCAAGAGGGCATACATGAGTGTGAAGGAACTAAAGGAGGCCTT
GCAGCTCAACAGCACTCACTTCCTTAATGTCTACTTCGCCAGCTCAGTCCGGGAAGACCTTGCAGGTTCT
GCCACATGGCCCTGGGACAAGGAAGCTCTCAGTCACCTGGGTGGTGTTGTCCTCAACCCAACCTATTATG
GCATGCTTGGCCACACCAACATCATGATCCATGAGGTGGGACATGTCCTGGGACTCTACCATGTATTCAA
AGGAGTCAGTGAAAGAGAATCCTGTGATGATCCCTGTAGAGAGACAGTGCCATCCATGGAGACAGGAGAC
CTGTGTGCTGACACTGCTCCCACACCCAAGAGCAAGCTGTGTCGGGACCCAGAGCCAGCTAATGACACCT
GTGGCTTCACCCTCTTCCCAGGGGCTCCGTTCAATAACTACATGAGCTACACAGATGATGAGTGCACTGA
CAACTTCACCCCTAACCAAGTGGCCCGGATGCATTGCTACTTGGACCTCGTATACCAGCAATGGAGTGAA
AGCCAAAAACCTACCCCCATACCCATACCACCCATGGTTATTGGGCAAACCCACAAGTCCCTTACTATCC
ATTGGCTGCCTCCAATCAGTGGAGTTGTGTATGATAGGGCCCCTGACAGCATGTGTAGTGCCTGCACTGA
AGATGGGACATTCCGTCAGTATGTATACAAGGCATCCTCTGGGCGGGTGTGTGACTCTTCAGGTTACTGG
ACTCCAGAGGAGGCTGTGGGGCCTCCTGATGTCGATCAACCCTGTGAGCCTAGCTTGCAGGCCTGGAGTC
CTGAGCTCCACCTAAACCACATGAATATGACCGTGCCCTGCCCAGCAGAAGGCTGTAGCTTGGAGTTGCT
TTTTCAATACCCGGTCCAGGCGGATACCCTCACCCTCTGGGTCACTTACCTCTCCATGAACTCTTCCAAG
GCATTCTTTGACATAGAGATCTTGCTAGAACACAAAAAATCTATGCACCTTGGACCTTTAAACACTTTTT
GTGACATACCGCTCACCATCAAACTCCACATGGATGAGAAGGTCATGGGAGCGAAAGTCTACACCTTTGA
TGAACGAATGGAAATTGATGCTGCTCTCCTGACCTCTCGGCCCAATAGTTCCTTGTGTTCTGGATGCAAG
CCTATGAGTTACCAGGTTCTTCGAGAGCCTCCTTTTTCCAGTGGCTTGCCCATGGTGGTGACACATCCAC
ACAGAAAGTTCACAGATACGGAGGTCATCCCTGGGCAGATGTATCAGTACCAAGTTCAAGCTGAAGCTGT
AGGGGAACTCGGAGAAGCTTCACCTCCTCTGAGCCACATTCACGGAGGCCCTTACTGTGGAGATGGGAAG
GTAGAAAGGAGTATCGGAGAGATGTGTGATGATGGAGACCTGTTGAATGGAGATGGGTGCTCAAGAGCAT
GTGAACTGGAGGAAGGCTTCAATTGTGCAGGGGAGCCAAGCCTTTGCTACAGGTATGAGGGAGATGGGGT
TTGTGAAGATTTTGAGAAGGAAAGCATCATCACAGACTGTGGCCTCCACACTCCTGAAGGATATTTGGAT
CAGTGGGCTAGCCAGGCTTATTCCTACCATGAAGACAAGGAGAAATGTCCTGTTTCCCTGGTAACAGGAG
AACCTCATTCAATGATCTGTACTTCATGGCACCCGGATTCATCCCCATATCATTCCTTTCCTGGCTGGTT
TCCCTGTGTCTTCAGTCTGAAGAAAGACCAGGATGCAGGCAGTGAGCAGGCTAAAGATAGCCTGCAGAAG
GACAATGAAATTTGGCTTGAAGTGTGTTTCAATAGGCCAGGGGTTGCAGTGGCAATTTACATTTTCTTGG
CATCGGATGGCGTGACCCCTGGGGAGCATCAGCAGGCAACAGTGACCCTTTACCTGATTGATGTCAGTGG
AAGCAACCACTCTCTTGGAACCTATGGACTGTCGTGTCAACAAAATCCACTGGTTATCAATGTGAGCCAT
CATGTGAATGTCTACCCCCAACATACCTCCTCCATGCTGCTGAATTTTTCATCCCCACTGGTGGGCATCT
CAGCAGTGGCTCTAAGGACATCCTCCCAGACCAGTTCTTCAGCTCCCAGTAACTGCATCCCAGAGCAAAA
TTATGAGGGAAAGAGCTGTGCTCAACGACCTTGTGGAGAACAGGGAAGATGTGCGCCATTGCTACTCGAT
CATACGGACATGGTGAATTGTACCTCCAGTAGCCCAGGTCACATGGAGTGCGCTATCACTTGTCAAAGGG
GGTATGTCCTTCAGACCAGCAGTGGGCAGTACCTGAGGAACATGCAGAAAGAGATTCTCCTTACTTGTTC
CTCTGGCCACTGGGACAAGGATGTGATCTGCAAGCGTCTTGACTGTGGTGTCCCAGACTCCTCCTTGGTG
AATTATGCAAACTTCTCCTGCTTGGAGGGTACAGACTTTCTGAAACAATGTTCCATCTCGTGTGTCCCAC
CGGCTAAGCTCCAAGGACTGAACCCATGGCTGACATGTCTTGAAGATGGACTCTGGTCTCTCCCTGAAGT
CTACTGCAAGTTGGAATGTGAAGCTCCTCCAGTTATTCCCAATGCCAATCTGCTCCTGCCACATTTCCTG
GAAGGCAACCATGATGTGGGCACCATCTGCAAATATGAGTGCAAACCAGGCTACTATGTGAAGGAGACTT
CAGGAAGTCAAGGCAAGAACAAGTTCCTGAAGATCCAGTGCCTGGATGATGGAAGCTGGGAACAAGGGAG
CTGCGTCCCCGTGGTTTGTGAGCCTCCTCCTCCGGTGTTTGAAGGCATGTACGAATGTACTGATGGCTTC
AAGCTGGACAGCCAGTGTGTGCTCAACTGTAACCAGGAAACGGAAGGGATTCCCATCCTCTGCACTAAAG
AGGGGTTGTGGACCCAGGAATTCAAGTTGTGTGAAAACCTGCAAGGAGAATGCCCACCACCCACCTCAGA
GCTGAATTCTGTGGAGTACAAGTGTGGACAGGGATATGGGATCGGTGCAGTGTGCTCCCCATCATGTGTA
ATCCCCCCTAGTGACCCTGTGATACTACCAGAGAATGTGACTACTGACACTTTGGAGCACTGGATGGAAC
CTGTCAAAGTCCAGAGTATCGTGTGTACCGGCAGGCGCCAGTGGCACCCAGATCCCTCTCTGGTGCACTG
CATCCAGTCATGTGAGCCTTTCCAAGCAGATGGTTGGTGTGACACTATTAATAACCGGGCCTACTGCAAC
TATGACGGGGGAGACTGCTGCTCTTCCACACTCTCTTCCAAGAAGGTCATTCCATTTGCTGCTGATTGTG
ACTTGGATGAATGCACCTGTCGAGACCCCAAGGCAGAAGAAAACCAGTAA

Translation (1789 aa):
MMCWKVLRISLVVLTGWALSTTNSEQGWTRKKFLAQKEHLNQVLLEGERCWLGYKVRRPRTAPQHHLFGV
YPSRLENYPRSYPVGTQQQTLYAEWSQRSPERQAPSGIPRDLTENPAGARRESQQPAAPWVGDGPIGQSQ
LLRNDDTYLGEGGSKEALGEPAIQGSSEIAVSTIATFAYQKGPTAETQRKGQSKSRLPRQVQKRQAEDMT
GDPQNTPQGFQLWPKEPLKHGDSDSPLEGTIQNGGGASLRRVETFNSQGGLPVLYFTGKRERLLLRPEVL
AEIPREAFTVEAWVRPEGGQSNPAIIAGVFDNCSHTVNDKGWALGIRSGKDKGWRDARFFFSLRTDRMKK
ATIVTGHSRYQPGMWTHVAATYDGQHTALYVDGTRVASSRDQFGPLNSPFMASCRSLILGGDSSEDGHYF
RGYLGTLVIWSTALSQTHLQHSPLHPSAADELTTLILTATFDPLMEQWAPFRDDLYPRLEVLQDSESQPE
ILSPLQPPPCGQTACDNVELISQYNKHGPLRREKVIRYQVVNIYDDEGLHPIVSDHQIRRQHEALNQAFS
RYNISWQLSVHRVHNSTLRHRVVLVNCEPSKIGNDHCDPECEHPLTGFDGGDCRLQGRCYSWNRRDGLCH
VECNNMLNDFDDGDCCDPEVTDVRKTCFDPDSPKRAYMSVKELKEALQLNSTHFLNVYFASSVREDLAGS
ATWPWDKEALSHLGGVVLNPTYYGMLGHTNIMIHEVGHVLGLYHVFKGVSERESCDDPCRETVPSMETGD
LCADTAPTPKSKLCRDPEPANDTCGFTLFPGAPFNNYMSYTDDECTDNFTPNQVARMHCYLDLVYQQWSE
SQKPTPIPIPPMVIGQTHKSLTIHWLPPISGVVYDRAPDSMCSACTEDGTFRQYVYKASSGRVCDSSGYW
TPEEAVGPPDVDQPCEPSLQAWSPELHLNHMNMTVPCPAEGCSLELLFQYPVQADTLTLWVTYLSMNSSK
AFFDIEILLEHKKSMHLGPLNTFCDIPLTIKLHMDEKVMGAKVYTFDERMEIDAALLTSRPNSSLCSGCK
PMSYQVLREPPFSSGLPMVVTHPHRKFTDTEVIPGQMYQYQVQAEAVGELGEASPPLSHIHGGPYCGDGK
VERSIGEMCDDGDLLNGDGCSRACELEEGFNCAGEPSLCYRYEGDGVCEDFEKESIITDCGLHTPEGYLD
QWASQAYSYHEDKEKCPVSLVTGEPHSMICTSWHPDSSPYHSFPGWFPCVFSLKKDQDAGSEQAKDSLQK
DNEIWLEVCFNRPGVAVAIYIFLASDGVTPGEHQQATVTLYLIDVSGSNHSLGTYGLSCQQNPLVINVSH
HVNVYPQHTSSMLLNFSSPLVGISAVALRTSSQTSSSAPSNCIPEQNYEGKSCAQRPCGEQGRCAPLLLD
HTDMVNCTSSSPGHMECAITCQRGYVLQTSSGQYLRNMQKEILLTCSSGHWDKDVICKRLDCGVPDSSLV
NYANFSCLEGTDFLKQCSISCVPPAKLQGLNPWLTCLEDGLWSLPEVYCKLECEAPPVIPNANLLLPHFL
EGNHDVGTICKYECKPGYYVKETSGSQGKNKFLKIQCLDDGSWEQGSCVPVVCEPPPPVFEGMYECTDGF
KLDSQCVLNCNQETEGIPILCTKEGLWTQEFKLCENLQGECPPPTSELNSVEYKCGQGYGIGAVCSPSCV
IPPSDPVILPENVTTDTLEHWMEPVKVQSIVCTGRRQWHPDPSLVHCIQSCEPFQADGWCDTINNRAYCN
YDGGDCCSSTLSSKKVIPFAADCDLDECTCRDPKAEENQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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