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Report for CCDS15084.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15084.1 Public Mus musculus 1 Farsb 23 108 98 CCDS HistoryNCBI Gene:23874Re-query CCDS DB by CCDS ID:15084.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15084.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068333.13 ENSMUSP00000069508.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068333.13Link to Ensembl Protein Viewer:ENSMUSP00000069508.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000068333Re-query CCDS DB by Protein ID:ENSMUSP00000069508
Original member Current member EBI ENSMUST00000170217.7 ENSMUSP00000129828.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170217.7Link to Ensembl Protein Viewer:ENSMUSP00000129828.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170217Re-query CCDS DB by Protein ID:ENSMUSP00000129828
Original member NCBI NM_001278075.1 NP_001265004.1 Updated not alive Link to Nucleotide Sequence:NM_001278075.1Link to Protein Sequence:NP_001265004.1Re-query CCDS DB by Nucleotide ID:NM_001278075Re-query CCDS DB by Protein ID:NP_001265004
Current member NCBI NM_001278075.2 NP_001265004.1 Accepted alive Link to Nucleotide Sequence:NM_001278075.2Link to Protein Sequence:NP_001265004.1Re-query CCDS DB by Nucleotide ID:NM_001278075Re-query CCDS DB by Protein ID:NP_001265004Link to BLAST:NP_001265004.1
Original member NCBI NM_011811.4 NP_035941.2 Updated not alive Link to Nucleotide Sequence:NM_011811.4Link to Protein Sequence:NP_035941.2Re-query CCDS DB by Nucleotide ID:NM_011811Re-query CCDS DB by Protein ID:NP_035941
Current member NCBI NM_011811.5 NP_035941.2 Accepted alive Link to Nucleotide Sequence:NM_011811.5Link to Protein Sequence:NP_035941.2Re-query CCDS DB by Nucleotide ID:NM_011811Re-query CCDS DB by Protein ID:NP_035941Link to BLAST:NP_035941.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265004.1 589 Q9WUA2 589 100% 0 0
NP_035941.2 589 Q9WUA2 589 100% 0 0

Chromosomal Locations for CCDS 15084.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 78425194 78425345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78443635 78443790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78454754 78454871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78458565 78458657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78462306 78462386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78462835 78463042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78463272 78463333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78466967 78467018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78467971 78468032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78469252 78469322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78471083 78471191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78472484 78472634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78476190 78476305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78478193 78478262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78479957 78480111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78482308 78482363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78488785 78488842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1770 nt):
ATGCCGACTGTCAGCGTAAAGCGAGACCTGCTCTTCCAAGCCCTGGGCCGGACCTACACTGATGAAGAGT
TTGACGAACTGTGTTTTGAATTTGGTCTGGAACTTGATGAAATTACTTCTGAAAAGCAAATCATAAGCAA
GGAACAAGGTCATGGGAAGGCACAGGGGGCCTCAGATGTTGTGCTTTACAAGATTGACGTCCCTGCCAAC
AGATACGACCTCCTGTGTCTGGAAGGACTGGCTCGGGGCCTCCAGGTCTTCAAAGAAAGGATCAAAGCTC
CGGTATATAAGCGAGTGATGCCCAAGGGAGACATCCAAAAGCTGGTTATCACAGAAGAGACAGCCAAAGT
GCGCCCTTTTGCTGTAGCAGCAGTTCTCCGGAATATCAAGTTCACTAAAGACCGATATGACAGCTTCATT
GAACTTCAGGAGAAACTACACCAGAATATCTGCAGGAAAAGAGCGTTGGTTGCTATTGGAACTCACGACT
TGGACACTTTATCAGGCCCATTTACTTACACCGCGAAACGTCCTTCAGATATCAAATTCAAGCCTCTGAA
TAAGACCAAGGAGTATACAGCTTGTGAATTAATGAACATATACAAGACTGACAACCACCTTAAACATTAT
TTACATATCATTGAAAGTAAGCCCCTGTATCCAGTTATCTATGACAGCAATGGTGTGGTCCTGTCGATGC
CTCCGATTATAAATGGGAATCATTCAAAAATAACAGTAAATACTAGGAATATATTTATTGAATGCACAGG
GACTGACTTCACTAAAGCAAAAATCGTGCTTGACATTATTGTCACCATGTTCAGTGAACACTGTGAAAAT
CAGTTTACAGTTGAAGCAGTTGAAGTAGTTTCTCCTAATGGAAAATCAAGTACCTTTCCAGAGCTGCCTT
ACAGAAAGGAGATGGTGAGAGCTGATTTAATTAACAAGAAAGTTGGAATCAGAGAAACTCCTGCAAATCT
CGCCAAGCTCCTGACCAGGATGTGTCTGAAGTCAGAAGTCATAGGTGACGGCAATCAGATTGAGGTTGAA
ATTCCTCCGACCAGAGCAGATGTCATCCATGCATGTGACATTGTGGAGGACGCAGCTATTGCTTATGGCT
ATAACAACATTCAGATGACTCTGCCGAAAACGTACACCATAGCTAATCAATTTCCTCTCAACAAGCTCAC
CGAGCTCCTCAGACTTGACATGGCTGCGGCTGGCTTCACCGAAGCACTGACTTTTGCTCTGTGCTCCCAA
GAAGATATTGCTGACAAGCTTGGCCTGGATATCTCTGCAACAAAGGCAGTGCACATAAGTAATCCTAAAA
CCGCTGAGTTCCAGGTGGCGCGCACTACCCTTCTTCCTGGCCTTCTAAAGACCATTGCAGCAAACCGGAA
GATGCCCCTTCCTCTCAAACTGTTTGAAATCTCTGACGTTGTAGTAAAAGATTCTGGCAAAGATGTAGGT
GCGAAAAACTACAGGCATCTCTGTGCTGTTTATTACAACAAGACTCCCGGGTTTGAGATCATCCATGGCT
TGCTGGACAGAATTATGCAGCTGCTCGATGTGCCTCCTGGTGAGGAAAGCGGGGGCTACATGATCAAAGC
GTCTGCAGGTTCTGCCTTTTTCCCTGGACGGTGTGCTGAGATCTTTGTTGGAGGTCAAAGCATTGGGAAG
CTAGGCGTCCTTCATCCTGATGTTATCACCAAATTTGAGCTGACCATGCCCTGTTCCTCTCTGGAAATCA
ATATTGAGCCCTTTTTGTGA

Translation (589 aa):
MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKQIISKEQGHGKAQGASDVVLYKIDVPAN
RYDLLCLEGLARGLQVFKERIKAPVYKRVMPKGDIQKLVITEETAKVRPFAVAAVLRNIKFTKDRYDSFI
ELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKHY
LHIIESKPLYPVIYDSNGVVLSMPPIINGNHSKITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEHCEN
QFTVEAVEVVSPNGKSSTFPELPYRKEMVRADLINKKVGIRETPANLAKLLTRMCLKSEVIGDGNQIEVE
IPPTRADVIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRLDMAAAGFTEALTFALCSQ
EDIADKLGLDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDVVVKDSGKDVG
AKNYRHLCAVYYNKTPGFEIIHGLLDRIMQLLDVPPGEESGGYMIKASAGSAFFPGRCAEIFVGGQSIGK
LGVLHPDVITKFELTMPCSSLEINIEPFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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