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Report for CCDS49788.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49788.1 Public Mus musculus 16 Cdc45 23 108 98 CCDS HistoryNCBI Gene:12544Re-query CCDS DB by CCDS ID:49788.1Re-query CCDS DB by GeneID:12544See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49788.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096990.9 ENSMUSP00000094753.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096990.9Link to Ensembl Protein Viewer:ENSMUSP00000094753.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000096990Re-query CCDS DB by Protein ID:ENSMUSP00000094753
Original member NCBI NM_001161623.2 NP_001155095.1 Updated not alive Link to Nucleotide Sequence:NM_001161623.2Link to Protein Sequence:NP_001155095.1Re-query CCDS DB by Nucleotide ID:NM_001161623Re-query CCDS DB by Protein ID:NP_001155095
Current member NCBI NM_001161623.3 NP_001155095.1 Accepted alive Link to Nucleotide Sequence:NM_001161623.3Link to Protein Sequence:NP_001155095.1Re-query CCDS DB by Nucleotide ID:NM_001161623Re-query CCDS DB by Protein ID:NP_001155095Link to BLAST:NP_001155095.1

Chromosomal Locations for CCDS 49788.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 18781898 18781962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18784806 18784882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18785073 18785191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18786769 18786852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18786930 18787068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18793178 18793339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18794762 18794860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18795095 18795226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18795825 18795944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18797349 18797399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18798676 18798737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18801801 18801849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18805382 18805437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18807280 18807423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18810389 18810481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18811305 18811364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 18811515 18811565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGTTCGTGACCGATTTCCGCAAGGAGTTCTACGAGACGGTCCACAACCAGAGGGTCCTTCTCTTTGTGG
CCTCGGACGTGGATGCCTTGTGTGCTTGCAAGATCCTCCAGGCCCTGTTTCAGTGTGACCACGTCCAGTA
TACGCTGGTTCCGGTTTCTGGGTGGCAAGAACTTGAAACTGCATATCTTGAACATAAAGAGCAGATCAAA
TTGCTTATTAAACAAGAGGATGACCTTGAGGTTCCTGCCTACGACGACATCTTTAGAGATGAAGCAGAGG
ATGAAGATCTTTCAGACAGTGACGGTGATGGGTCAGAGCCTTCAGAGAAGCGCACACGGTTAGAAGAGGA
GATAGTGGAGCGAAACAGGAAGAGGAGGCAGCGCAGGGAGTGGGAGGCCCGAAGGAAAGACATCCTCTTT
GACTACGAGCAGTATGAATATTATGGGACATCGTCGGCCATGGTGATGTTTGACCTGGCGTGGATGATGT
CCAAGGACCTGAATGACATGCTGTGGTGGGCCATTGTTGGACTGACAGACCAGTGGGTGCATGACAAGAT
CACTCAAATGAAGTACGTGACTGATGTTGGCATCCTGCAGCGTCATGTGTCCCGTCATAACCACCGAAAC
GAGGCGGAGGAGAACATGCTCTCTGTAGACTGCACCCGGATCTCCTTCGAGTATGACCTCTGCCTGGTAC
TGTATCAGCACTGGTCCCTCCATGAAAGCCTGTACAACACCAGCTACACAGCAGCCAGGTTTAAGCTCTG
GTCTGTGCATGGGCAGAAACGACTCCAGGAGTTCCTTGCAGACATGGGGCTTCCCCTGAAGCAAGTCAAG
CAGAAATTTCAGTCCATGGACGTTTCCTTGAAGGGGAATCTGCGAGAAATGATTGAAGAATCTGCAAATA
AATTTGGGATGAAGGACATGCGTGTACAGACTTTCAGCATTCAGTTTGGGTTCAAGCATAAATTCCTGGC
CAGTGATGTCGTCTTTGCCACCATGTCTCTAATGGAGAGTCCTGAGAAGGATGGCTCAGGGACAGACCAC
TTCATCCAGGCTCTCGATAGCCTCTCCAGGAGTAACCTGGACAAGCTATACCTTGGTCTAGAGCTCGCCA
AGAAGCACCTCCAAGCCACACAACAGACCATCGCCAGCTGTCTCTGTACCAACCTCGTCACTTCCCAGGG
CCCTTTTCTCTACTGCTCACTCATGGAGGGCACTCCAGATGTCACCCTGTTTTCCAAGCCAGCATCCTTG
AGTCTGCTCAGCAGACATCTGCTCAAGTCCTTTGTGTACTCGACAAAGAATCGACGATGCAAGCTGCTGC
CCCTGGTGATGGCTGCCCCGCTGAGCGTGGAACAGGGCACAGTGACCGTGGTGGGCATCCCCCCAGAGAC
TGATAGCTCGGATAGAAAGAACTTTTTTGGTCGGGCTTTTGAGAAGGCAGCAGAAAGCACCAGCTCTCGG
ACTCTACACAATTACTTTGACCTCTCAGTAATTGAGCTGAAGGCTGAGGACCGGAGCAAGTTCCTGGACG
CTCTTGTGTCACTGCTGTCCTGA

Translation (520 aa):
MFVTDFRKEFYETVHNQRVLLFVASDVDALCACKILQALFQCDHVQYTLVPVSGWQELETAYLEHKEQIK
LLIKQEDDLEVPAYDDIFRDEAEDEDLSDSDGDGSEPSEKRTRLEEEIVERNRKRRQRREWEARRKDILF
DYEQYEYYGTSSAMVMFDLAWMMSKDLNDMLWWAIVGLTDQWVHDKITQMKYVTDVGILQRHVSRHNHRN
EAEENMLSVDCTRISFEYDLCLVLYQHWSLHESLYNTSYTAARFKLWSVHGQKRLQEFLADMGLPLKQVK
QKFQSMDVSLKGNLREMIEESANKFGMKDMRVQTFSIQFGFKHKFLASDVVFATMSLMESPEKDGSGTDH
FIQALDSLSRSNLDKLYLGLELAKKHLQATQQTIASCLCTNLVTSQGPFLYCSLMEGTPDVTLFSKPASL
SLLSRHLLKSFVYSTKNRRCKLLPLVMAAPLSVEQGTVTVVGIPPETDSSDRKNFFGRAFEKAAESTSSR
TLHNYFDLSVIELKAEDRSKFLDALVSLLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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