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Report for CCDS27934.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27934.1 Public Mus musculus 16 AU021092 23 108 98 CCDS HistoryNCBI Gene:239691Re-query CCDS DB by CCDS ID:27934.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27934.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050160.5 ENSMUSP00000058860.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050160.5Link to Ensembl Protein Viewer:ENSMUSP00000058860.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000050160Re-query CCDS DB by Protein ID:ENSMUSP00000058860
Original member NCBI NM_001033220.3 NP_001028392.2 Updated not alive Link to Nucleotide Sequence:NM_001033220.3Link to Protein Sequence:NP_001028392.2Re-query CCDS DB by Nucleotide ID:NM_001033220Re-query CCDS DB by Protein ID:NP_001028392
Current member NCBI NM_001033220.4 NP_001028392.2 Accepted alive Link to Nucleotide Sequence:NM_001033220.4Link to Protein Sequence:NP_001028392.2Re-query CCDS DB by Nucleotide ID:NM_001033220Re-query CCDS DB by Protein ID:NP_001028392Link to BLAST:NP_001028392.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028392.2 385 Q3UST5 385 100% 0 0

Chromosomal Locations for CCDS 27934.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 5211992 5212212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5212592 5212672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5214603 5214707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5215977 5216112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5216742 5216859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5217798 5217948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5220296 5220445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5222063 5222258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGGCGAGACTCGGGCTGCTTCTCCTCCTGCTGCTGGCCCTGCCACCACACTTCTCCTCAGTGTCATGGC
CAGACACTGCACAGGGCACCATGGCAAACTTGATCCTGACTGCATTAGAAAAAGCCACCTTGTTCTTGGA
GGACAGGCTGCCCACAATCAACCTGGATGGTGTGGTGGGCTTCCAAGTGCTGGAAGTGCAACTCCGAGGA
GTTCAGGAAAAATGGGCTCACAAGCCCTTGCTGCAGCCTCTCAGCATGCGCGCTGGACAGATGGCCAACA
CACTGTCTGCTCTCCTCCAAAAATCCATCTTCTACCTCAAGCAGAGTGACCCCACGTACCTAAGAGAGTT
CCAGCCAAGCATTCAGCCTGGGTTTTGGAAGTTGCCCAATGACTGGACACGCACCAATGCCTCCCTAGTC
TACCCCTGGCTGGAACCCCTGGACTCTTTCTCAGAGGAAAGCAGCGATGTGTGCCTGGTGCAACTACTAG
GAACAGGGACAGACAGCAGCCAGCCTTGCAGGCTCTCCAACTTCTGCAGAACCCTTATGACCAAGGCCGG
CTGCTCAGGCTACAGCCTCTCCCATCAGCTGCTCTTCTTCCTCTGGGCCAGAATGCAAGGGTGCACGGAG
GGACTGTTCCTCCAGAGCCAACACTACATGGACATCTTCTGTGCCAATATGATGGAACTGAACCACAGAG
CTGAGGCCGTTGGATACGCTTACCCCACCCAAGACCTCTTCATGGAAAACATTATGTTCTGTGGTATGGC
TGGCTTCTCTGACTTCTACAAGCTGCGCTGGCTGGAGGCCATTCTCAGCTGGCAGAACCCCCAGGTGGGA
TGCTTCGGGAGGCCTGACACAAAGGGTGAACCTTCTGAAGTTCCACATCAGCAGGGCATTCTGAGAAGAG
TGCGAAGGCGGGAAAAACTGTTCGCAGATGGCTGTTCGTGCCACAACACAGCCACAGCAGTCGCAGCCCT
GGGTGGCTTTCTCTACATCCTGGCAGAATACCACCCAGACAATGGAGATGCACATCCAGAATACTACCCA
AACCATGGAGATCCATACTCATCCTCACAGTCACCAGCAAGCAACTACCAAGATGGTGCTGCCGGCCCTG
ACGTCCAGAGGACTGGCAGGCCCCTTAGTGTTTCTTAA

Translation (385 aa):
MARLGLLLLLLLALPPHFSSVSWPDTAQGTMANLILTALEKATLFLEDRLPTINLDGVVGFQVLEVQLRG
VQEKWAHKPLLQPLSMRAGQMANTLSALLQKSIFYLKQSDPTYLREFQPSIQPGFWKLPNDWTRTNASLV
YPWLEPLDSFSEESSDVCLVQLLGTGTDSSQPCRLSNFCRTLMTKAGCSGYSLSHQLLFFLWARMQGCTE
GLFLQSQHYMDIFCANMMELNHRAEAVGYAYPTQDLFMENIMFCGMAGFSDFYKLRWLEAILSWQNPQVG
CFGRPDTKGEPSEVPHQQGILRRVRRREKLFADGCSCHNTATAVAALGGFLYILAEYHPDNGDAHPEYYP
NHGDPYSSSQSPASNYQDGAAGPDVQRTGRPLSVS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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