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Report for CCDS29231.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29231.1 Public Mus musculus 18 Fem1c 23 108 98 CCDS HistoryNCBI Gene:240263Re-query CCDS DB by CCDS ID:29231.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29231.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036226.5 ENSMUSP00000038816.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036226.5Link to Ensembl Protein Viewer:ENSMUSP00000038816.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000036226Re-query CCDS DB by Protein ID:ENSMUSP00000038816
Original member Current member NCBI NM_173423.4 NP_775599.1 Accepted alive Link to Nucleotide Sequence:NM_173423.4Link to Protein Sequence:NP_775599.1Re-query CCDS DB by Nucleotide ID:NM_173423Re-query CCDS DB by Protein ID:NP_775599Link to BLAST:NP_775599.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775599.1 617 Q8CEF1 617 100% 0 0

Chromosomal Locations for CCDS 29231.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 46505080 46506389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46524102 46524645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1854 nt):
ATGGATCTAAAGACAGCGGTGTTCAACGCAGCGCGCGATGGCAAACTCCGGCTCCTCACCAAGTTGCTGG
CAAGCAAATCGAAAGCGGAGGTTTCCTCCTTAATCTCGGAGAAAACAAATGGGGCCACCCCACTCTTGAT
GGCTGCTAGGTATGGACACCTCGACATGGTAGAATTCCTTCTAGAGCAGTGCAGTGCTTCCATAGAAGTC
GGGGGCTCTGTTAACTTTGACGGGGAAACCATCGAGGGGGCCCCCCCTTTATGGGCCGCTTCTGCAGCAG
GACATCTGAAGGTTGTCCAGTCTTTGTTAAATCACGGAGCATCTGTCAACAACACGACTTTAACCAACTC
AACTCCTCTTCGAGCCGCGTGCTTCGATGGCCATTTGGAAATAGTGAAATACCTTGTAGAACACAAAGCC
GATTTGGAAGTGTCCAACCGCCATGGGCATACTTGCTTGATGATTTCATGCTATAAAGGACACAAAGAAA
TCGCTCAGTATTTACTTGAAAAGGGGGCAGATGTTAACAGAAAAAGTGTTAAAGGCAACACTGCATTGCA
TGATTGTGCAGAGTCTGGAAGTTTGGACATCATGAAGATGCTGCTTATGTATTGTGCCAAGATGGAGAAA
GATGGCTACGGAATGACTCCTCTTCTCTCAGCAAGTGTGACTGGTCACACTAATATTGTGGATTTTCTTA
CGCACCATGCCCAGACAAGCAAGACAGAACGTATTAATGCTCTAGAGCTTCTGGGAGCTACGTTTGTAGA
TAAAAAAAGAGATTTACTTGGGGCTTTGAAATACTGGAAAAAGGCGATGAACATGAGGTACAGTGATAGG
ACTAATATAATTAGTAAACCAGTCCCACAGACACTGATAATGGCCTATGACTATGCCAAGGAGGTAAACA
GTGCAGAAGAGTTAGAAGGTCTTATTGCTGATCCTGATGAGATGAGAATGCAAGCGCTGTTAATTAGAGA
ACGGATTCTTGGTCCTTCTCATCCCGATACCTCTTACTACATTAGATATAGGGGTGCTGTCTACGCTGAC
TCTGGAAATTTTAAGCGATGCATCAACCTATGGAAATATGCTTTGGATATGCAGCAGAGCAATTTGGACC
CTTTAAGCCCAATGACTGCCAGCAGCTTACTGTCTTTTGCAGAACTGTTCTCCTTCATGCTACAGGACAG
GGCTAAAGGCTTGCTGGGCACTACTGTTACATTTGATGATCTCATGGGCATACTGTGCAAAAGTGTCCTT
GAAATTGAGCGAGCTATCAAACAAACTCAGTGTCCAGCTGACCCATTGCAGTTAAATAAGGCTCTTTCCA
TCATTTTGCACTTAATTTGCTTATTAGAAAAAGTTCCTTGTACTGTAGAACAGGATCATTTCAAAAAGCA
GACCATCTACAGGTTTCTTAAGTTGCATCCAAGAGGAAAGAATAACTTCAGCCCTCTGCATCTGGCTGTG
GACAAGAATACTACATGTGTGGGGCGGTACCCTGTTTGTAAGTTTCCATCTCTGCAAGTTACTGCGATAC
TGATAGAATGTGGTGCTGATGTGAATGTCAGAGACTCTGATGACAACAGTCCCCTACATATCGCGGCTCT
GAATAACCATCCAGACATCATGAATCTCCTTATTAAATCAGGTGCACATTTTGATGCCACAAACTTACAC
AAACAGACTGCCAGTGACTTGCTGGACGAGAAGGAGATAGCTAAAAATTTGATACAGCCCATAAATCATA
CCACATTGCAGTGTCTTGCTGCTCGTGTCATCGTGAATCATAGAATCTATTACAAAGGGAACATCCCAGA
AAAGCTAGAGACCTTTGTTTCACTTCATAGATGA

Translation (617 aa):
MDLKTAVFNAARDGKLRLLTKLLASKSKAEVSSLISEKTNGATPLLMAARYGHLDMVEFLLEQCSASIEV
GGSVNFDGETIEGAPPLWAASAAGHLKVVQSLLNHGASVNNTTLTNSTPLRAACFDGHLEIVKYLVEHKA
DLEVSNRHGHTCLMISCYKGHKEIAQYLLEKGADVNRKSVKGNTALHDCAESGSLDIMKMLLMYCAKMEK
DGYGMTPLLSASVTGHTNIVDFLTHHAQTSKTERINALELLGATFVDKKRDLLGALKYWKKAMNMRYSDR
TNIISKPVPQTLIMAYDYAKEVNSAEELEGLIADPDEMRMQALLIRERILGPSHPDTSYYIRYRGAVYAD
SGNFKRCINLWKYALDMQQSNLDPLSPMTASSLLSFAELFSFMLQDRAKGLLGTTVTFDDLMGILCKSVL
EIERAIKQTQCPADPLQLNKALSIILHLICLLEKVPCTVEQDHFKKQTIYRFLKLHPRGKNNFSPLHLAV
DKNTTCVGRYPVCKFPSLQVTAILIECGADVNVRDSDDNSPLHIAALNNHPDIMNLLIKSGAHFDATNLH
KQTASDLLDEKEIAKNLIQPINHTTLQCLAARVIVNHRIYYKGNIPEKLETFVSLHR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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